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Q1QN15

- RL6_NITHX

UniProt

Q1QN15 - RL6_NITHX

Protein

50S ribosomal protein L6

Gene

rplF

Organism
Nitrobacter hamburgensis (strain X14 / DSM 10229)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 52 (01 Oct 2014)
      Sequence version 1 (16 May 2006)
      Previous versions | rss
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    Functioni

    This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciNHAM323097:GHP7-1583-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L6UniRule annotation
    Gene namesi
    Name:rplFUniRule annotation
    Ordered Locus Names:Nham_1560
    OrganismiNitrobacter hamburgensis (strain X14 / DSM 10229)
    Taxonomic identifieri323097 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeNitrobacter
    ProteomesiUP000001953: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 17717750S ribosomal protein L6PRO_0000260902Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.UniRule annotation

    Protein-protein interaction databases

    STRINGi323097.Nham_1560.

    Structurei

    3D structure databases

    ProteinModelPortaliQ1QN15.
    SMRiQ1QN15. Positions 1-176.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L6P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0097.
    HOGENOMiHOG000039903.
    KOiK02933.
    OMAiKYADEFI.
    OrthoDBiEOG67DPRD.

    Family and domain databases

    Gene3Di3.90.930.12. 2 hits.
    HAMAPiMF_01365_B. Ribosomal_L6_B.
    InterProiIPR000702. Ribosomal_L6.
    IPR020040. Ribosomal_L6_a/b-dom.
    IPR019906. Ribosomal_L6_bac-type.
    IPR002358. Ribosomal_L6_CS.
    [Graphical view]
    PANTHERiPTHR11655. PTHR11655. 1 hit.
    PfamiPF00347. Ribosomal_L6. 2 hits.
    [Graphical view]
    PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
    PRINTSiPR00059. RIBOSOMALL6.
    SUPFAMiSSF56053. SSF56053. 2 hits.
    TIGRFAMsiTIGR03654. L6_bact. 1 hit.
    PROSITEiPS00525. RIBOSOMAL_L6_1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q1QN15-1 [UniParc]FASTAAdd to Basket

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    MSRIGKRPVT VPSGVTATVE GQTVRMKGPK GQLEFVVHND VEVKLENGAV    50
    KVAPRYETNR AQALYGTARA QVANLVAGVT KGFEKKLEIV GVGYRAALQG 100
    KTLQLALGYS HDVSYAIPEG ITIAVPKPTE ITIAGNDAQR VGQVAAEIRG 150
    YRPPEPYKGK GVKYADEFIF RKEGKKK 177
    Length:177
    Mass (Da):19,122
    Last modified:May 16, 2006 - v1
    Checksum:iDF442D8FF6553CD0
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000319 Genomic DNA. Translation: ABE62382.1.
    RefSeqiWP_011510068.1. NC_007964.1.
    YP_576842.1. NC_007964.1.

    Genome annotation databases

    EnsemblBacteriaiABE62382; ABE62382; Nham_1560.
    GeneIDi4033134.
    KEGGinha:Nham_1560.
    PATRICi22690773. VBINitHam61822_2411.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000319 Genomic DNA. Translation: ABE62382.1 .
    RefSeqi WP_011510068.1. NC_007964.1.
    YP_576842.1. NC_007964.1.

    3D structure databases

    ProteinModelPortali Q1QN15.
    SMRi Q1QN15. Positions 1-176.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 323097.Nham_1560.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABE62382 ; ABE62382 ; Nham_1560 .
    GeneIDi 4033134.
    KEGGi nha:Nham_1560.
    PATRICi 22690773. VBINitHam61822_2411.

    Phylogenomic databases

    eggNOGi COG0097.
    HOGENOMi HOG000039903.
    KOi K02933.
    OMAi KYADEFI.
    OrthoDBi EOG67DPRD.

    Enzyme and pathway databases

    BioCyci NHAM323097:GHP7-1583-MONOMER.

    Family and domain databases

    Gene3Di 3.90.930.12. 2 hits.
    HAMAPi MF_01365_B. Ribosomal_L6_B.
    InterProi IPR000702. Ribosomal_L6.
    IPR020040. Ribosomal_L6_a/b-dom.
    IPR019906. Ribosomal_L6_bac-type.
    IPR002358. Ribosomal_L6_CS.
    [Graphical view ]
    PANTHERi PTHR11655. PTHR11655. 1 hit.
    Pfami PF00347. Ribosomal_L6. 2 hits.
    [Graphical view ]
    PIRSFi PIRSF002162. Ribosomal_L6. 1 hit.
    PRINTSi PR00059. RIBOSOMALL6.
    SUPFAMi SSF56053. SSF56053. 2 hits.
    TIGRFAMsi TIGR03654. L6_bact. 1 hit.
    PROSITEi PS00525. RIBOSOMAL_L6_1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: X14 / DSM 10229.

    Entry informationi

    Entry nameiRL6_NITHX
    AccessioniPrimary (citable) accession number: Q1QN15
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 28, 2006
    Last sequence update: May 16, 2006
    Last modified: October 1, 2014
    This is version 52 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3