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Protein

Putative thymidine phosphorylase

Gene

Nham_1900

Organism
Nitrobacter hamburgensis (strain DSM 10229 / NCIMB 13809 / X14)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

Thymidine + phosphate = thymine + 2-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosyltransferase, Transferase

Names & Taxonomyi

Protein namesi
Recommended name:
Putative thymidine phosphorylaseUniRule annotation (EC:2.4.2.4UniRule annotation)
Alternative name(s):
TdRPaseUniRule annotation
Gene namesi
Ordered Locus Names:Nham_1900
OrganismiNitrobacter hamburgensis (strain DSM 10229 / NCIMB 13809 / X14)
Taxonomic identifieri323097 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeNitrobacter
Proteomesi
  • UP000001953 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003147041 – 510Putative thymidine phosphorylaseAdd BLAST510

Interactioni

Protein-protein interaction databases

STRINGi323097.Nham_1900

Structurei

3D structure databases

ProteinModelPortaliQ1QM39
SMRiQ1QM39
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. Type 2 subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105CMW Bacteria
COG0213 LUCA
HOGENOMiHOG000252767
KOiK00758
OrthoDBiPOG091H02BC

Family and domain databases

Gene3Di3.40.1030.10, 2 hits
3.90.1170.30, 1 hit
HAMAPiMF_00703 Thymid_phosp_2, 1 hit
InterProiView protein in InterPro
IPR000312 Glycosyl_Trfase_fam3
IPR017459 Glycosyl_Trfase_fam3_N_dom
IPR036320 Glycosyl_Trfase_fam3_N_dom)sf
IPR035902 Nuc_phospho_transferase
IPR036566 PYNP-like_C_sf
IPR013102 PYNP_C
IPR017872 Pyrmidine_PPase_CS
IPR028579 Thym_Pase_Put
IPR013466 Thymidine/AMP_Pase
IPR000053 Thymidine/pyrmidine_PPase
PANTHERiPTHR10515 PTHR10515, 1 hit
PfamiView protein in Pfam
PF02885 Glycos_trans_3N, 1 hit
PF00591 Glycos_transf_3, 1 hit
PF07831 PYNP_C, 1 hit
PIRSFiPIRSF000478 TP_PyNP, 1 hit
SMARTiView protein in SMART
SM00941 PYNP_C, 1 hit
SUPFAMiSSF47648 SSF47648, 1 hit
SSF52418 SSF52418, 1 hit
SSF54680 SSF54680, 1 hit
TIGRFAMsiTIGR02645 ARCH_P_rylase, 1 hit
PROSITEiView protein in PROSITE
PS00647 THYMID_PHOSPHORYLASE, 1 hit

Sequencei

Sequence statusi: Complete.

Q1QM39-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNGTDLPRLQ PKIRRVNLDT GRENVVVISR HSAALRPEIF RGFSRVELRR
60 70 80 90 100
NAKIMLATLI ITDDDSLVGP DDLGLSEPAF RRFAEPVGSA VTIAPAASPA
110 120 130 140 150
SLDAVRAKIM GQTFSAVDIS AIIDDLTHYR YSDMEIAAFL ISSASFMTNG
160 170 180 190 200
ELIALVDSMA RAGTQLKWRN PIIVDKHCIG GIPGNRTSMI VVPIVAAHGL
210 220 230 240 250
TIPKTSSRAI TSPAGTADTM EMLARVDVGV EEMKDIVAAC RGCLVWGGHV
260 270 280 290 300
NLSPADDILI SVERPLGLDT REQMVASILS KKLAAGSTHL LIDLPVGPTA
310 320 330 340 350
KLVNEMEAMR LRKLFEFVGD HYGISVEVVV TDGRQPIGNG IGPVLEAQDV
360 370 380 390 400
MAVLANDPEA PADLREKSLR LAAHLLEYDP KLRGGSGYAR ARELLDSGAA
410 420 430 440 450
LKQMQKIIDA QGPPTCCTDL GNLTFDVTAS RDGFVSGINC LQLNRLARIA
460 470 480 490 500
GAPIDKGAGI RLFKKIGDRV QQGEPLYRIH AFERSGRDLA AAGTTAYTID
510
SEESNLEATP
Length:510
Mass (Da):54,756
Last modified:January 15, 2008 - v2
Checksum:i787647AD246C0489
GO

Sequence cautioni

The sequence ABE62708 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000319 Genomic DNA Translation: ABE62708.1 Different initiation.
RefSeqiWP_041357912.1, NC_007964.1

Genome annotation databases

EnsemblBacteriaiABE62708; ABE62708; Nham_1900
KEGGinha:Nham_1900

Similar proteinsi

Entry informationi

Entry nameiTYPH_NITHX
AccessioniPrimary (citable) accession number: Q1QM39
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: January 15, 2008
Last modified: March 28, 2018
This is version 68 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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