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Q1QGQ0 (Q1QGQ0_NITHX) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 57. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Nham_3907 EMBL ABE64597.1
OrganismNitrobacter hamburgensis (strain X14 / DSM 10229) [Complete proteome] [HAMAP] EMBL ABE64597.1
Taxonomic identifier323097 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeNitrobacter

Protein attributes

Sequence length900 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABE64597.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q1QGQ0 [UniParc].

Last modified May 16, 2006. Version 1.
Checksum: 06C318B5D5509322

FASTA90099,295
        10         20         30         40         50         60 
MVKKLLVKYR AKRDFSKTAE PSGNLKVKPS KSLRFVIQKH AASHLHYDLR LELDGVFKSW 

        70         80         90        100        110        120 
AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPKGQYGG GTVMVWDRGY WECDDPERAY 

       130        140        150        160        170        180 
QKGKLDFTLE GEKLHGGWIL TRMRKREGEK RTNWLLIKHR DEFAREGKKN RILQEDTSVA 

       190        200        210        220        230        240 
SSRSMDQITA GKGKGPKPFV AAKRSRAPAK AEWKPHRASA RASTPRKRSA PDRSRAGRSP 

       250        260        270        280        290        300 
EKKAGEKGNA IADRSMPPFI APQLCSLVER PPSGSDWIHE IKFDGYRIQM RVENSDVSLK 

       310        320        330        340        350        360 
TRKGLDWTPK FGAIAKAADA LPDCIVDGEI VALDHRGSPD FAGLQAALSD GKSDDLIFFA 

       370        380        390        400        410        420 
FDLLFLKGDD LRRQSLADRK QALKKLIEKT YGKDQVQAEI RYVEHFESGG EAVLKSACRM 

       430        440        450        460        470        480 
SLEGIVSKQT AARYVSGRTE SWSKAKCRAG HEVVIGGWKS NGNQFKSLMA GIYRGDHLVY 

       490        500        510        520        530        540 
VGNVGTGYSA EKVARLMPRL KAAASATNPF VGNNAPRKKA GMHWLKPELV AEIEFAGFTG 

       550        560        570        580        590        600 
AGMIRQAAFK GLRQDKPASE VEAETPAPAD SAGIAKPAPA LRTKSSASLP SAAKGGIVMG 

       610        620        630        640        650        660 
VPLSRPDKIL WPDDGQGPIT KLDLALYYES VGARMMEHLK GRPCSIIRAP DGIEGQRFFQ 

       670        680        690        700        710        720 
RHSMKGGSSL LEEVTVSGDR KPYVQIDRIE GLAAVAQSAG VELHPWNNQP GDPALPGRLV 

       730        740        750        760        770        780 
FDLDPAPDVD FAVVIDAAKE MRDRLSQLGL VSFCKTTGGK GLHVVTPLAR PKKGQRLDWA 

       790        800        810        820        830        840 
AAKQFARDVC SQMARESPDR YLINMSKAKR TGKIFLDYLR NDQFSTAVAP LSPRARAHAP 

       850        860        870        880        890        900 
VSMPITWAKV KPGLDPMQYT IRTVPQLLKK SKAWFEYCES ERPLLDPIAK LARRSTKLAA 

« Hide

References

[1]"Complete sequence of chromosome of Nitrobacter hamburgensis X14."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Kyrpides N., Ivanova N., Ward B., Arp D., Klotz M., Stein L., O'Mullan G., Starkenburg S., Sayavedra L., Poret-Peterson A.T., Gentry M.E., Bruce D., Richardson P.
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: X14 / DSM 10229.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000319 Genomic DNA. Translation: ABE64597.1.
RefSeqYP_579057.1. NC_007964.1.

3D structure databases

ProteinModelPortalQ1QGQ0.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING323097.Nham_3907.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABE64597; ABE64597; Nham_3907.
GeneID4032663.
KEGGnha:Nham_3907.
PATRIC22695966. VBINitHam61822_4974.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMARTETWAK.
OrthoDBEOG661H49.

Enzyme and pathway databases

BioCycNHAM323097:GHP7-3969-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ1QGQ0_NITHX
AccessionPrimary (citable) accession number: Q1QGQ0
Entry history
Integrated into UniProtKB/TrEMBL: May 16, 2006
Last sequence update: May 16, 2006
Last modified: May 14, 2014
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)