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Protein
Submitted name:

ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module

Gene

Nham_3907

Organism
Nitrobacter hamburgensis (strain X14 / DSM 10229)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciNHAM323097:GHP7-3969-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase moduleImported
Gene namesi
Ordered Locus Names:Nham_3907Imported
OrganismiNitrobacter hamburgensis (strain X14 / DSM 10229)Imported
Taxonomic identifieri323097 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeNitrobacter
ProteomesiUP000001953 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi323097.Nham_3907.

Structurei

3D structure databases

ProteinModelPortaliQ1QGQ0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiEYCESER.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1QGQ0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVKKLLVKYR AKRDFSKTAE PSGNLKVKPS KSLRFVIQKH AASHLHYDLR
60 70 80 90 100
LELDGVFKSW AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPKGQYGG
110 120 130 140 150
GTVMVWDRGY WECDDPERAY QKGKLDFTLE GEKLHGGWIL TRMRKREGEK
160 170 180 190 200
RTNWLLIKHR DEFAREGKKN RILQEDTSVA SSRSMDQITA GKGKGPKPFV
210 220 230 240 250
AAKRSRAPAK AEWKPHRASA RASTPRKRSA PDRSRAGRSP EKKAGEKGNA
260 270 280 290 300
IADRSMPPFI APQLCSLVER PPSGSDWIHE IKFDGYRIQM RVENSDVSLK
310 320 330 340 350
TRKGLDWTPK FGAIAKAADA LPDCIVDGEI VALDHRGSPD FAGLQAALSD
360 370 380 390 400
GKSDDLIFFA FDLLFLKGDD LRRQSLADRK QALKKLIEKT YGKDQVQAEI
410 420 430 440 450
RYVEHFESGG EAVLKSACRM SLEGIVSKQT AARYVSGRTE SWSKAKCRAG
460 470 480 490 500
HEVVIGGWKS NGNQFKSLMA GIYRGDHLVY VGNVGTGYSA EKVARLMPRL
510 520 530 540 550
KAAASATNPF VGNNAPRKKA GMHWLKPELV AEIEFAGFTG AGMIRQAAFK
560 570 580 590 600
GLRQDKPASE VEAETPAPAD SAGIAKPAPA LRTKSSASLP SAAKGGIVMG
610 620 630 640 650
VPLSRPDKIL WPDDGQGPIT KLDLALYYES VGARMMEHLK GRPCSIIRAP
660 670 680 690 700
DGIEGQRFFQ RHSMKGGSSL LEEVTVSGDR KPYVQIDRIE GLAAVAQSAG
710 720 730 740 750
VELHPWNNQP GDPALPGRLV FDLDPAPDVD FAVVIDAAKE MRDRLSQLGL
760 770 780 790 800
VSFCKTTGGK GLHVVTPLAR PKKGQRLDWA AAKQFARDVC SQMARESPDR
810 820 830 840 850
YLINMSKAKR TGKIFLDYLR NDQFSTAVAP LSPRARAHAP VSMPITWAKV
860 870 880 890 900
KPGLDPMQYT IRTVPQLLKK SKAWFEYCES ERPLLDPIAK LARRSTKLAA
Length:900
Mass (Da):99,295
Last modified:May 15, 2006 - v1
Checksum:i06C318B5D5509322
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000319 Genomic DNA. Translation: ABE64597.1.
RefSeqiWP_011512229.1. NC_007964.1.
YP_579057.1. NC_007964.1.

Genome annotation databases

EnsemblBacteriaiABE64597; ABE64597; Nham_3907.
KEGGinha:Nham_3907.
PATRICi22695966. VBINitHam61822_4974.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000319 Genomic DNA. Translation: ABE64597.1.
RefSeqiWP_011512229.1. NC_007964.1.
YP_579057.1. NC_007964.1.

3D structure databases

ProteinModelPortaliQ1QGQ0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi323097.Nham_3907.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABE64597; ABE64597; Nham_3907.
KEGGinha:Nham_3907.
PATRICi22695966. VBINitHam61822_4974.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiEYCESER.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciNHAM323097:GHP7-3969-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: X14 / DSM 10229Imported.

Entry informationi

Entry nameiQ1QGQ0_NITHX
AccessioniPrimary (citable) accession number: Q1QGQ0
Entry historyi
Integrated into UniProtKB/TrEMBL: May 15, 2006
Last sequence update: May 15, 2006
Last modified: March 31, 2015
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.