Reviewed, UniProtKB/Swiss-Prot Q1QEW1 (RLMF_PSYCK)

Names and origin

Protein names

Recommended name:
    Ribosomal RNA large subunit methyltransferase F
    EC=2.1.1.48
Alternative name(s):
    23S rRNA mA1618 methyltransferase
    rRNA adenine N-6-methyltransferase

Gene names

Name:	rlmF
Ordered Locus Names:	Pcryo_0008

Organism

Psychrobacter cryohalolentis (strain K5) [Complete proteome] [HAMAP]

Taxonomic identifier

335284 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Moraxellaceae › Psychrobacter

Protein attributes

Sequence length	345 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Specifically methylates the adenine in position 1618 of 23S rRNA By similarity.
Catalytic activity	S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing N(6)-methyladenine. HAMAP MF_01848
Subcellular location	Cytoplasm Potential.
Sequence similarities	Belongs to the methyltransferase superfamily. METT10D/rlmF family.

Ontologies

Keywords
Biological process	rRNA processing
Cellular component	Cytoplasm
Ligand	S-adenosyl-L-methionine
Molecular function	Methyltransferase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	rRNA processing Inferred from electronic annotation. Source: HAMAP
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	rRNA (adenine-N6-)-methyltransferase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 345	345	Ribosomal RNA large subunit methyltransferase F HAMAP MF_01848		PRO_0000349941

Sequences

	Sequence		Length	Mass (Da)
	Q1QEW1-1 [UniParc]. Last modified September 2, 2008. Version 2. Checksum: C6CA35B6AFEAEFE0	FASTA	345	38,728
	10 20 30 40 50 60 MTSKPMNRRP TANNHRNRSP ETAKKLGQLH PRNPHQGRYD FEVLTRALPE LAKHTITNPK 70 80 90 100 110 120 GESTINFSDS AAVRVLNQAL LANYYGVKFW DIPEGYLCPP IPGRADYIHY IADLLAQTTH 130 140 150 160 170 180 VNKDNTPPTG KEIHALDIGT GASAIYPIVG SQSYGWRFTA SDIDPISVNT AALICETNPK 190 200 210 220 230 240 LKSAVKVKLQ TEPKFIFKNI IGRQDYFDVV VCNPPFHASL EEAMEANSRK QHNLQRHRGK 250 260 270 280 290 300 NENEQISRSS TKPGNAAQNL NFGGQHKELW SEGGEIAFLT KMAKESQDFA EHVGWFTTLV 310 320 330 340 SKSENVKPLQ LLLKQLGVAQ MRIIEMSQGQ KSTRILAWRF NTDEE

References

[1]

"Complete sequence of chromosome of Psychrobacter cryohalolentis K5." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Sims D.R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Richardson P. Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	CP000323 Genomic DNA. Translation: ABE73792.1. Different initiation.
RefSeq	YP_579276.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	4034876.
GenomeReviews	Gene locus Pcryo_0008 in contig CP000323_GR.
KEGG	pcr:Pcryo_0008.
NMPDR	fig|335284.3.peg.432.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	Q1QEW1.
Family and domain databases
HAMAP	MF_01848. [Tree]
InterPro	IPR010286. SAM-Mtase_prd. [Graphical view]
PANTHER	PTHR13393. DUF890. 1 hit.
Pfam	PF05971. Methyltransf_10. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RLMF_PSYCK

Accession

Primary (citable) accession number: Q1QEW1

Entry history

Integrated into UniProtKB/Swiss-Prot:	September 2, 2008
Last sequence update:	September 2, 2008
Last modified:	June 16, 2009
This is version 22 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)