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Protein

Ribosomal RNA large subunit methyltransferase F

Gene

rlmF

Organism
Psychrobacter cryohalolentis (strain K5)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Specifically methylates the adenine in position 1618 of 23S rRNA.UniRule annotation

Catalytic activityi

S-adenosyl-L-methionine + adenine(1618) in 23S rRNA = S-adenosyl-L-homocysteine + rRNA containing N(6)-methyladenine(1618) in 23S rRNA.UniRule annotation

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Methyltransferase, Transferase

Keywords - Biological processi

rRNA processing

Keywords - Ligandi

S-adenosyl-L-methionine

Enzyme and pathway databases

BioCyciPCRY335284:GHE9-8-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA large subunit methyltransferase FUniRule annotation (EC:2.1.1.181UniRule annotation)
Alternative name(s):
23S rRNA mA1618 methyltransferaseUniRule annotation
rRNA adenine N-6-methyltransferaseUniRule annotation
Gene namesi
Name:rlmFUniRule annotation
Ordered Locus Names:Pcryo_0008
OrganismiPsychrobacter cryohalolentis (strain K5)
Taxonomic identifieri335284 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesMoraxellaceaePsychrobacter
Proteomesi
  • UP000002425 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 345345Ribosomal RNA large subunit methyltransferase FPRO_0000349941Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi335284.Pcryo_0008.

Structurei

3D structure databases

ProteinModelPortaliQ1QEW1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the methyltransferase superfamily. METTL16/RlmF family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105EBA. Bacteria.
COG3129. LUCA.
HOGENOMiHOG000218605.
KOiK06970.
OrthoDBiEOG6742SX.

Family and domain databases

Gene3Di3.40.50.150. 2 hits.
HAMAPiMF_01848. 23SrRNA_methyltr_F.
InterProiIPR002052. DNA_methylase_N6_adenine_CS.
IPR016909. rRNA_lsu_MeTfrase_F.
IPR010286. rRNA_lsu_MeTfrase_F-like.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PANTHERiPTHR13393. PTHR13393. 2 hits.
PfamiPF05971. Methyltransf_10. 1 hit.
[Graphical view]
PIRSFiPIRSF029038. Mtase_YbiN_prd. 1 hit.
SUPFAMiSSF53335. SSF53335. 1 hit.

Sequencei

Sequence statusi: Complete.

Q1QEW1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTSKPMNRRP TANNHRNRSP ETAKKLGQLH PRNPHQGRYD FEVLTRALPE
60 70 80 90 100
LAKHTITNPK GESTINFSDS AAVRVLNQAL LANYYGVKFW DIPEGYLCPP
110 120 130 140 150
IPGRADYIHY IADLLAQTTH VNKDNTPPTG KEIHALDIGT GASAIYPIVG
160 170 180 190 200
SQSYGWRFTA SDIDPISVNT AALICETNPK LKSAVKVKLQ TEPKFIFKNI
210 220 230 240 250
IGRQDYFDVV VCNPPFHASL EEAMEANSRK QHNLQRHRGK NENEQISRSS
260 270 280 290 300
TKPGNAAQNL NFGGQHKELW SEGGEIAFLT KMAKESQDFA EHVGWFTTLV
310 320 330 340
SKSENVKPLQ LLLKQLGVAQ MRIIEMSQGQ KSTRILAWRF NTDEE
Length:345
Mass (Da):38,728
Last modified:September 2, 2008 - v2
Checksum:iC6CA35B6AFEAEFE0
GO

Sequence cautioni

The sequence ABE73792.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000323 Genomic DNA. Translation: ABE73792.1. Different initiation.
RefSeqiWP_041753306.1. NC_007969.1.

Genome annotation databases

EnsemblBacteriaiABE73792; ABE73792; Pcryo_0008.
KEGGipcr:Pcryo_0008.
PATRICi23059399. VBIPsyCry128170_0053.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000323 Genomic DNA. Translation: ABE73792.1. Different initiation.
RefSeqiWP_041753306.1. NC_007969.1.

3D structure databases

ProteinModelPortaliQ1QEW1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi335284.Pcryo_0008.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABE73792; ABE73792; Pcryo_0008.
KEGGipcr:Pcryo_0008.
PATRICi23059399. VBIPsyCry128170_0053.

Phylogenomic databases

eggNOGiENOG4105EBA. Bacteria.
COG3129. LUCA.
HOGENOMiHOG000218605.
KOiK06970.
OrthoDBiEOG6742SX.

Enzyme and pathway databases

BioCyciPCRY335284:GHE9-8-MONOMER.

Family and domain databases

Gene3Di3.40.50.150. 2 hits.
HAMAPiMF_01848. 23SrRNA_methyltr_F.
InterProiIPR002052. DNA_methylase_N6_adenine_CS.
IPR016909. rRNA_lsu_MeTfrase_F.
IPR010286. rRNA_lsu_MeTfrase_F-like.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PANTHERiPTHR13393. PTHR13393. 2 hits.
PfamiPF05971. Methyltransf_10. 1 hit.
[Graphical view]
PIRSFiPIRSF029038. Mtase_YbiN_prd. 1 hit.
SUPFAMiSSF53335. SSF53335. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Psychrobacter cryohalolentis K5."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Sims D.R., Gilna P., Schmutz J.
    , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Richardson P.
    Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K5.

Entry informationi

Entry nameiRLMF_PSYCK
AccessioniPrimary (citable) accession number: Q1QEW1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: September 2, 2008
Last modified: November 11, 2015
This is version 64 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.