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Q1QDK5 (Q1QDK5_PSYCK) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 47. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Deoxyribodipyrimidine photo-lyase type I EMBL ABE74248.1
EC=4.1.99.3 EMBL ABE74248.1
Gene names
Ordered Locus Names:Pcryo_0465
OrganismPsychrobacter cryohalolentis (strain K5) [Complete proteome] [HAMAP] EMBL ABE74248.1
Taxonomic identifier335284 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Moraxellaceae › Psychrobacter ›

Protein attributes

Sequence length541 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the DNA photolyase class-1 family. RuleBase RU004182

Ontologies

Keywords
   Molecular functionLyase EMBL ABE74248.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functiondeoxyribodipyrimidine photo-lyase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q1QDK5 [UniParc].

Last modified May 16, 2006. Version 1.
Checksum: 432C484842DCACE1

FASTA54162,473
        10         20         30         40         50         60 
MSKTAVAIKN NSHNKVEDSH QFHYLMWFRR DLRVHDNTAL AAICERANED NAQLSAVFFL 

        70         80         90        100        110        120 
TPEQWQAHDM SLTQLDHIAR TLPILAEKLH QLNIILTVQV CPSFTDCIVT LSALCESNNI 

       130        140        150        160        170        180 
SCVMANHEYE GNEVARDELL TKQLANNEIE FIRWHDQCIL PPKSITTNDD SMYQVFTPFY 

       190        200        210        220        230        240 
KKWRHTLEVS DIQIHTALAI IDNKQVNLTL SEHSANTTQD IEALCKKTVH DYQEYLQTHE 

       250        260        270        280        290        300 
SYQNIDTDKQ ISQARLAYPA GEAEACHRLE HFIADDIDNY DVSRDVPSLQ ATSQLSTYLT 

       310        320        330        340        350        360 
IGAISPRLCY LQATQALGKL RRNDGDNFDS GDNNDINRWI SELAWRDFYR HVLDYKPELI 

       370        380        390        400        410        420 
RHQAYKYETD KKINWSYDED AFAAWREGKT GVPLVDAAMR CLNATGFMHN RLRMVTAMFL 

       430        440        450        460        470        480 
TKDLLIDWRW GERYFMQQLI DGDFASNNGG WQWSASTGTD SAPYFRIMNP FSQAKSHDTE 

       490        500        510        520        530        540 
GIFIKTWLPE LKPIPTSILH REDKMRKALS KNGTFADIDY PVPIVEHKLA RQLVIAEFKK 


E

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References

[1]"Complete sequence of chromosome of Psychrobacter cryohalolentis K5."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Sims D.R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Richardson P.
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K5.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000323 Genomic DNA. Translation: ABE74248.1.
RefSeqYP_579732.1. NC_007969.1.

3D structure databases

ProteinModelPortalQ1QDK5.
ModBaseSearch...

Protein-protein interaction databases

STRING335284.Pcryo_0465.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABE74248; ABE74248; Pcryo_0465.
GeneID4034822.
KEGGpcr:Pcryo_0465.
PATRIC23060385. VBIPsyCry128170_0531.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0415.
HOGENOMHOG000245621.
KOK01669.
OMAWISELAW.
ProtClustDBCLSK838948.

Enzyme and pathway databases

BioCycPCRY335284:GHE9-530-MONOMER.

Family and domain databases

Gene3D3.40.50.620. 1 hit.
InterProIPR018394. DNA_photolyase_1_CS_C.
IPR006050. DNA_photolyase_N.
IPR005101. Photolyase_FAD-bd/Cryptochr_C.
IPR014729. Rossmann-like_a/b/a_fold.
[Graphical view]
PfamPF00875. DNA_photolyase. 1 hit.
PF03441. FAD_binding_7. 1 hit.
[Graphical view]
SUPFAMSSF52425. DNA_photolyase_N. 1 hit.
SSF48173. Photolyase_FAD-bd/Cryptochr_C. 1 hit.
PROSITEPS00394. DNA_PHOTOLYASES_1_1. 1 hit.
PS51645. PHR_CRY_ALPHA_BETA. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ1QDK5_PSYCK
AccessionPrimary (citable) accession number: Q1QDK5
Entry history
Integrated into UniProtKB/TrEMBL: May 16, 2006
Last sequence update: May 16, 2006
Last modified: May 1, 2013
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info