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Q1PHM9 (Q1PHM9_9HIV1) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 61. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Envelope glycoprotein gp160 RuleBase RU004292
Gene names
Name:env EMBL ABE02700.1
OrganismHuman immunodeficiency virus 1 EMBL ABE02700.1
Taxonomic identifier11676 [NCBI]
Taxonomic lineageVirusesRetro-transcribing virusesRetroviridaeOrthoretrovirinaeLentivirusPrimate lentivirus group
Virus hostHomo sapiens (Human) [TaxID: 9606]

Protein attributes

Sequence length844 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

The envelope glyprotein gp160 precursor down-modulates cell surface CD4 antigen by interacting with it in the endoplasmic reticulum and blocking its transport to the cell surface By similarity. RuleBase RU004292 SAAS SAAS000328

The gp120-gp41 heterodimer allows rapid transcytosis of the virus through CD4 negative cells such as simple epithelial monolayers of the intestinal, rectal and endocervical epithelial barriers. Both gp120 and gp41 specifically recognize glycosphingolipids galactosyl-ceramide (GalCer) or 3' sulfo-galactosyl-ceramide (GalS) present in the lipid rafts structures of epithelial cells. Binding to these alternative receptors allows the rapid transcytosis of the virus through the epithelial cells. This transcytotic vesicle-mediated transport of virions from the apical side to the basolateral side of the epithelial cells does not involve infection of the cells themselves By similarity. SAAS SAAS000328

Subcellular location

Virion membrane; Single-pass type I membrane protein. Host cell membrane; Single-pass type I membrane protein. Host endosome membrane; Single-pass type I membrane protein By similarity SAAS SAAS000328.

Ontologies

Keywords
   Biological processApoptosis SAAS SAAS000328
Fusion of virus membrane with host membrane SAAS SAAS000328
Host-virus interaction
Viral attachment to host cell RuleBase RU004292 SAAS SAAS000328
Viral immunoevasion RuleBase RU004292
Viral penetration into host cytoplasm
Virus entry into host cell
   Cellular componentHost cell membrane SAAS SAAS000328
Host endosome SAAS SAAS000328
Host membrane
Membrane
Viral envelope protein RuleBase RU003294 SAAS SAAS000328 EMBL ABE02700.1
Virion
   DiseaseAIDS RuleBase RU003294
   DomainTransmembrane
Transmembrane helix SAAS SAAS000328
   PTMCleavage on pair of basic residues RuleBase RU004292
Disulfide bond SAAS SAAS000328
   Technical term3D-structure PDB 3U4E
Gene Ontology (GO)
   Biological_processapoptotic process

Inferred from electronic annotation. Source: UniProtKB-KW

evasion or tolerance by virus of host immune response

Inferred from electronic annotation. Source: UniProtKB-KW

membrane fusion involved in viral entry into host cell

Inferred from electronic annotation. Source: UniProtKB-KW

virion attachment to host cell

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componenthost cell endosome membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

host cell plasma membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

integral component of membrane

Inferred from electronic annotation. Source: UniProtKB-KW

viral envelope

Inferred from electronic annotation. Source: UniProtKB-KW

virion membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionstructural molecule activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q1PHM9 [UniParc].

Last modified May 16, 2006. Version 1.
Checksum: E372CBCC8DAEE5F4

FASTA84495,900
        10         20         30         40         50         60 
MRVRGILRNW PQWWIWSILG FWMLIICRVM GNLWVTVYYG VPVWKEAKAT LFCASDARAY 

        70         80         90        100        110        120 
EKEVHNVWAT HACVPTDPNP QEIYLGNVTE NFNMWKNDMV DQMHEDIISL WDQSLKPCVK 

       130        140        150        160        170        180 
LTPLCVTLRC TNATINGSLT EEVKNCSFNI TTELRDKKQK AYALFYRPDV VPLNKNSPSG 

       190        200        210        220        230        240 
NSSEYILINC NTSTITQACP KVSFDPIPIH YCAPAGYAIL KCNNKTFNGT GPCNNVSTVQ 

       250        260        270        280        290        300 
CTHGIKPVVS TQLLLNGSLA EEDIIIKSEN LTNNIKTIIV HLNKSVEIVC RRPNNNTRKS 

       310        320        330        340        350        360 
IRIGPGQAFY ATNDIIGDIR QAHCNINNST WNRTLEQIKK KLREHFLNRT IEFEPPSGGD 

       370        380        390        400        410        420 
LEVTTHSFNC GGEFFYCNTT RLFKWSSNVT NDTITIPCRI KQFINMWQGA GRAMYAPPIE 

       430        440        450        460        470        480 
GNITCNSSIT GLLLTRDGGK TDRNDTEIFR PGGGNMKDNW RNELYKYKVV EIKPLGVAPT 

       490        500        510        520        530        540 
EARRRVVERE KRAVGIGAVL LGFLGAAGST MGAASITLTV QARQLLSGIV QQQSNLLRAI 

       550        560        570        580        590        600 
EAQQHMLQLT VWGIKQLQTR VLAIERYLKD QQLLGLWGCS GKLICTTNVP WNSSWSNKSQ 

       610        620        630        640        650        660 
TDIWDNMTWI QWDREISNYS NTIYKLLEGS QNQQEQNEKD LLALDSWNNL WNWFNITNWL 

       670        680        690        700        710        720 
WYIKIFIMII GGLIGLRIIL GVLSIVKRVR QGYSPLSFQT LTPNPRGLDR LGRIEEEGGE 

       730        740        750        760        770        780 
QDKDRSIRLV NGFLALAWED LRSLCLFSYH RLRDFILIAV RAVELLGSSS LRGLQRGWEA 

       790        800        810        820        830        840 
LKYLGSLLQY WGLELKKSAI NLLDTVAIAV AEGTDRIIEL IQRICRAIRN IPRRIRQGFE 


AALL 

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Cross-references

Sequence databases

EMBL
GenBank
DDBJ
DQ435682 Genomic DNA. Translation: ABE02700.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3U4EX-ray2.18G/J125-244[»]
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

Gene3D2.170.40.20. 2 hits.
InterProIPR000777. HIV1_GP160.
IPR000328. Retroviral_envelope_protein.
[Graphical view]
PfamPF00516. GP120. 1 hit.
PF00517. GP41. 1 hit.
[Graphical view]
SUPFAMSSF56502. SSF56502. 2 hits.
ProtoNetSearch...

Entry information

Entry nameQ1PHM9_9HIV1
AccessionPrimary (citable) accession number: Q1PHM9
Entry history
Integrated into UniProtKB/TrEMBL: May 16, 2006
Last sequence update: May 16, 2006
Last modified: March 19, 2014
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)