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Protein

Pentatricopeptide repeat-containing protein At2g02750

Gene

PCMP-E22

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At2g02750
Gene namesi
Name:PCMP-E22
Ordered Locus Names:At2g02750
ORF Names:T20F6.11
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G02750.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 613613Pentatricopeptide repeat-containing protein At2g02750PRO_0000356004Add
BLAST

Proteomic databases

PaxDbiQ1PFA6.
PRIDEiQ1PFA6.

Expressioni

Gene expression databases

GenevisibleiQ1PFA6. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G02750.1.

Structurei

3D structure databases

ProteinModelPortaliQ1PFA6.
SMRiQ1PFA6. Positions 28-545.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati30 – 6435PPR 1Add
BLAST
Repeati65 – 9935PPR 2Add
BLAST
Repeati101 – 12626PPR 3Add
BLAST
Repeati128 – 16235PPR 4Add
BLAST
Repeati163 – 19331PPR 5Add
BLAST
Repeati194 – 22835PPR 6Add
BLAST
Repeati230 – 26435PPR 7Add
BLAST
Repeati265 – 29531PPR 8Add
BLAST
Repeati297 – 33135PPR 9Add
BLAST
Repeati332 – 36635PPR 10Add
BLAST
Repeati367 – 40135PPR 11Add
BLAST
Repeati402 – 43231PPR 12Add
BLAST
Repeati435 – 46935PPR 13Add
BLAST
Repeati470 – 50031PPR 14Add
BLAST
Repeati506 – 53934PPR 15Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni540 – 61374Type E motif; degenerateAdd
BLAST

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated
Contains 15 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000115618.
InParanoidiQ1PFA6.
OMAiNSMIAGM.
PhylomeDBiQ1PFA6.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 3 hits.
PF12854. PPR_1. 1 hit.
PF13041. PPR_2. 2 hits.
PF13812. PPR_3. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 7 hits.
PROSITEiPS51375. PPR. 11 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1PFA6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MINLTRQRYR VSNLVTGGTS LDVILSHSPN KFTFPPLLKS CAKLGDVVQG
60 70 80 90 100
RILHAQVVKT GFFVDVFTAT ALVSMYMKVK QVTDALKVLD EMPERGIASV
110 120 130 140 150
NAAVSGLLEN GFCRDAFRMF GDARVSGSGM NSVTVASVLG GCGDIEGGMQ
160 170 180 190 200
LHCLAMKSGF EMEVYVGTSL VSMYSRCGEW VLAARMFEKV PHKSVVTYNA
210 220 230 240 250
FISGLMENGV MNLVPSVFNL MRKFSSEEPN DVTFVNAITA CASLLNLQYG
260 270 280 290 300
RQLHGLVMKK EFQFETMVGT ALIDMYSKCR CWKSAYIVFT ELKDTRNLIS
310 320 330 340 350
WNSVISGMMI NGQHETAVEL FEKLDSEGLK PDSATWNSLI SGFSQLGKVI
360 370 380 390 400
EAFKFFERML SVVMVPSLKC LTSLLSACSD IWTLKNGKEI HGHVIKAAAE
410 420 430 440 450
RDIFVLTSLI DMYMKCGLSS WARRIFDRFE PKPKDPVFWN VMISGYGKHG
460 470 480 490 500
ECESAIEIFE LLREEKVEPS LATFTAVLSA CSHCGNVEKG SQIFRLMQEE
510 520 530 540 550
YGYKPSTEHI GCMIDLLGRS GRLREAKEVI DQMSEPSSSV YSSLLGSCRQ
560 570 580 590 600
HLDPVLGEEA AMKLAELEPE NPAPFVILSS IYAALERWED VESIRQVIDQ
610
KQLVKLPGLS LSG
Length:613
Mass (Da):67,936
Last modified:December 16, 2008 - v2
Checksum:iF42EA6B95C7E4DD2
GO

Sequence cautioni

The sequence ABK28160.1 differs from that shown. Reason: Erroneous termination at position 614. Translated as stop.Curated
The sequence BX821054 differs from that shown.Sequencing errors.Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti434 – 4341K → R in ABE65422 (PubMed:17147637).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002521 Genomic DNA. Translation: AAC05347.1.
CP002685 Genomic DNA. Translation: AEC05620.1.
DQ446457 Genomic DNA. Translation: ABE65422.1.
DQ652951 Genomic DNA. Translation: ABK28160.1. Sequence problems.
BX821054 mRNA. No translation available.
PIRiT00853.
RefSeqiNP_178378.1. NM_126330.3.
UniGeneiAt.41460.
At.66386.

Genome annotation databases

EnsemblPlantsiAT2G02750.1; AT2G02750.1; AT2G02750.
GeneIDi814804.
GrameneiAT2G02750.1; AT2G02750.1; AT2G02750.
KEGGiath:AT2G02750.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002521 Genomic DNA. Translation: AAC05347.1.
CP002685 Genomic DNA. Translation: AEC05620.1.
DQ446457 Genomic DNA. Translation: ABE65422.1.
DQ652951 Genomic DNA. Translation: ABK28160.1. Sequence problems.
BX821054 mRNA. No translation available.
PIRiT00853.
RefSeqiNP_178378.1. NM_126330.3.
UniGeneiAt.41460.
At.66386.

3D structure databases

ProteinModelPortaliQ1PFA6.
SMRiQ1PFA6. Positions 28-545.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G02750.1.

Proteomic databases

PaxDbiQ1PFA6.
PRIDEiQ1PFA6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G02750.1; AT2G02750.1; AT2G02750.
GeneIDi814804.
GrameneiAT2G02750.1; AT2G02750.1; AT2G02750.
KEGGiath:AT2G02750.

Organism-specific databases

TAIRiAT2G02750.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000115618.
InParanoidiQ1PFA6.
OMAiNSMIAGM.
PhylomeDBiQ1PFA6.

Miscellaneous databases

PROiQ1PFA6.

Gene expression databases

GenevisibleiQ1PFA6. AT.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 3 hits.
PF12854. PPR_1. 1 hit.
PF13041. PPR_2. 2 hits.
PF13812. PPR_3. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 7 hits.
PROSITEiPS51375. PPR. 11 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations."
    Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.
    Plant Biotechnol. J. 4:317-324(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  4. "Whole genome sequence comparisons and 'full-length' cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation."
    Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M., Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M., Weissenbach J., Salanoubat M.
    Genome Res. 14:406-413(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants."
    Aubourg S., Boudet N., Kreis M., Lecharny A.
    Plant Mol. Biol. 42:603-613(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.
  6. "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis."
    Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C., Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M., Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B., Taconnat L., Small I.
    Plant Cell 16:2089-2103(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.

Entry informationi

Entry nameiPP144_ARATH
AccessioniPrimary (citable) accession number: Q1PFA6
Secondary accession number(s): A0MEI0, O64507
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: December 16, 2008
Last modified: May 11, 2016
This is version 59 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.