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Protein

Pentatricopeptide repeat-containing protein At2g02750

Gene

PCMP-E22

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At2g02750
Gene namesi
Name:PCMP-E22
Ordered Locus Names:At2g02750
ORF Names:T20F6.11
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G02750
TAIRilocus:2058812 AT2G02750

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003560041 – 613Pentatricopeptide repeat-containing protein At2g02750Add BLAST613

Proteomic databases

PaxDbiQ1PFA6
PRIDEiQ1PFA6

Expressioni

Gene expression databases

ExpressionAtlasiQ1PFA6 baseline and differential
GenevisibleiQ1PFA6 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G02750.1

Structurei

3D structure databases

ProteinModelPortaliQ1PFA6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati30 – 64PPR 1Add BLAST35
Repeati65 – 99PPR 2Add BLAST35
Repeati101 – 126PPR 3Add BLAST26
Repeati128 – 162PPR 4Add BLAST35
Repeati163 – 193PPR 5Add BLAST31
Repeati194 – 228PPR 6Add BLAST35
Repeati230 – 264PPR 7Add BLAST35
Repeati265 – 295PPR 8Add BLAST31
Repeati297 – 331PPR 9Add BLAST35
Repeati332 – 366PPR 10Add BLAST35
Repeati367 – 401PPR 11Add BLAST35
Repeati402 – 432PPR 12Add BLAST31
Repeati435 – 469PPR 13Add BLAST35
Repeati470 – 500PPR 14Add BLAST31
Repeati506 – 539PPR 15Add BLAST34

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni540 – 613Type E motif; degenerateAdd BLAST74

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000115618
InParanoidiQ1PFA6
OMAiNSMIAGM
OrthoDBiEOG093605P0
PhylomeDBiQ1PFA6

Family and domain databases

Gene3Di1.25.40.10, 5 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 3 hits
PF13041 PPR_2, 3 hits
PF13812 PPR_3, 1 hit
TIGRFAMsiTIGR00756 PPR, 7 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 11 hits

Sequencei

Sequence statusi: Complete.

Q1PFA6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MINLTRQRYR VSNLVTGGTS LDVILSHSPN KFTFPPLLKS CAKLGDVVQG
60 70 80 90 100
RILHAQVVKT GFFVDVFTAT ALVSMYMKVK QVTDALKVLD EMPERGIASV
110 120 130 140 150
NAAVSGLLEN GFCRDAFRMF GDARVSGSGM NSVTVASVLG GCGDIEGGMQ
160 170 180 190 200
LHCLAMKSGF EMEVYVGTSL VSMYSRCGEW VLAARMFEKV PHKSVVTYNA
210 220 230 240 250
FISGLMENGV MNLVPSVFNL MRKFSSEEPN DVTFVNAITA CASLLNLQYG
260 270 280 290 300
RQLHGLVMKK EFQFETMVGT ALIDMYSKCR CWKSAYIVFT ELKDTRNLIS
310 320 330 340 350
WNSVISGMMI NGQHETAVEL FEKLDSEGLK PDSATWNSLI SGFSQLGKVI
360 370 380 390 400
EAFKFFERML SVVMVPSLKC LTSLLSACSD IWTLKNGKEI HGHVIKAAAE
410 420 430 440 450
RDIFVLTSLI DMYMKCGLSS WARRIFDRFE PKPKDPVFWN VMISGYGKHG
460 470 480 490 500
ECESAIEIFE LLREEKVEPS LATFTAVLSA CSHCGNVEKG SQIFRLMQEE
510 520 530 540 550
YGYKPSTEHI GCMIDLLGRS GRLREAKEVI DQMSEPSSSV YSSLLGSCRQ
560 570 580 590 600
HLDPVLGEEA AMKLAELEPE NPAPFVILSS IYAALERWED VESIRQVIDQ
610
KQLVKLPGLS LSG
Length:613
Mass (Da):67,936
Last modified:December 16, 2008 - v2
Checksum:iF42EA6B95C7E4DD2
GO

Sequence cautioni

The sequence ABK28160 differs from that shown. Reason: Erroneous termination at position 614. Translated as stop.Curated
The sequence BX821054 differs from that shown. Sequencing errors.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti434K → R in ABE65422 (PubMed:17147637).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002521 Genomic DNA Translation: AAC05347.1
CP002685 Genomic DNA Translation: AEC05620.1
DQ446457 Genomic DNA Translation: ABE65422.1
DQ652951 Genomic DNA Translation: ABK28160.1 Sequence problems.
BX821054 mRNA No translation available.
PIRiT00853
RefSeqiNP_178378.1, NM_126330.3
UniGeneiAt.41460
At.66386

Genome annotation databases

EnsemblPlantsiAT2G02750.1; AT2G02750.1; AT2G02750
GeneIDi814804
GrameneiAT2G02750.1; AT2G02750.1; AT2G02750
KEGGiath:AT2G02750

Similar proteinsi

Entry informationi

Entry nameiPP144_ARATH
AccessioniPrimary (citable) accession number: Q1PFA6
Secondary accession number(s): A0MEI0, O64507
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: December 16, 2008
Last modified: April 25, 2018
This is version 70 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health