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Protein

Agamous-like MADS-box protein AGL30

Gene

AGL30

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth.1 Publication

GO - Molecular functioni

GO - Biological processi

  • pollen maturation Source: UniProtKB
  • positive regulation of transcription by RNA polymerase II Source: InterPro
  • regulation of pollen tube growth Source: UniProtKB
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Agamous-like MADS-box protein AGL30Curated
Gene namesi
Name:AGL301 Publication
Ordered Locus Names:At2g03060Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G03060
TAIRilocus:2056760 AT2G03060

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004339661 – 386Agamous-like MADS-box protein AGL30Add BLAST386

Proteomic databases

PaxDbiQ1PFA4

Expressioni

Tissue specificityi

Expressed in pollen.1 Publication

Gene expression databases

ExpressionAtlasiQ1PFA4 differential
GenevisibleiQ1PFA4 AT

Interactioni

Subunit structurei

Forms heterodimers with AGL66 and AGL104.1 Publication

GO - Molecular functioni

Protein-protein interaction databases

IntActiQ1PFA4, 1 interactor
STRINGi3702.AT2G03060.2

Structurei

3D structure databases

ProteinModelPortaliQ1PFA4
SMRiQ1PFA4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 53MADS-boxPROSITE-ProRule annotationAdd BLAST53

Phylogenomic databases

eggNOGiKOG0014 Eukaryota
COG5068 LUCA
InParanoidiQ1PFA4
OMAiQLQSMSW
OrthoDBiEOG09360E9L
PhylomeDBiQ1PFA4

Family and domain databases

CDDicd00266 MADS_SRF_like, 1 hit
Gene3Di3.40.1810.10, 1 hit
InterProiView protein in InterPro
IPR033897 MADS_SRF-like
IPR002100 TF_MADSbox
IPR036879 TF_MADSbox_sf
PfamiView protein in Pfam
PF00319 SRF-TF, 1 hit
PRINTSiPR00404 MADSDOMAIN
SMARTiView protein in SMART
SM00432 MADS, 1 hit
SUPFAMiSSF55455 SSF55455, 1 hit
PROSITEiView protein in PROSITE
PS50066 MADS_BOX_2, 1 hit

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.Curated
Isoform 1 (identifier: Q1PFA4-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MGRVKLKIKK LENTNGRQST FAKRKNGILK KANELSILCD IDIVLLMFSP
60 70 80 90 100
TGKAAICCGT RSSMEEVIAK FSQVTPQERT KRKFESLENL KKTFQKLDHD
110 120 130 140 150
VNIREFIASS NSTVEDLSTQ ARILQARISE IHGRLSYWTE PDKINNVEHL
160 170 180 190 200
GQLEISIRQS LDQLRAHKEH FGQQQQAMQI ENANFVKDWS TCSMQDGIQI
210 220 230 240 250
PLEQQLQSMS WILNSNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT
260 270 280 290 300
GKSPEMTIPG QETSFLDELN TGQLKQDTSS QQQFTNNNNI TAYNPNLHND
310 320 330 340 350
MNHHQTLPPP PLPLTLPHAQ VYIPMNQREY HMNGFFEAPP PDSSAYNDNT
360 370 380
NQTRFGSSSS SLPCSISMFD EYLFSQVTKT KLSQRF
Length:386
Mass (Da):43,789
Last modified:May 16, 2006 - v1
Checksum:i4817C1564A1F2E4B
GO

Sequence cautioni

The sequence AAC32924 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence ABK28481 differs from that shown. Reason: Erroneous termination at position 387. Translated as stop.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004138 Genomic DNA Translation: AAC32924.2 Sequence problems.
CP002685 Genomic DNA Translation: AEC05661.1
DQ446459 mRNA Translation: ABE65796.1
DQ652954 mRNA Translation: ABK28481.1 Sequence problems.
PIRiH84443
RefSeqiNP_001318187.1, NM_001335152.1 [Q1PFA4-1]
UniGeneiAt.41433

Genome annotation databases

EnsemblPlantsiAT2G03060.2; AT2G03060.2; AT2G03060 [Q1PFA4-1]
GeneIDi814835
GrameneiAT2G03060.2; AT2G03060.2; AT2G03060 [Q1PFA4-1]
KEGGiath:AT2G03060

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiAGL30_ARATH
AccessioniPrimary (citable) accession number: Q1PFA4
Secondary accession number(s): A0MEI3, O80619
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 14, 2015
Last sequence update: May 16, 2006
Last modified: May 23, 2018
This is version 98 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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