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Protein

Agamous-like MADS-box protein AGL30

Gene

AGL30

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth.1 Publication

GO - Molecular functioni

GO - Biological processi

  • pollen maturation Source: UniProtKB
  • positive regulation of transcription from RNA polymerase II promoter Source: InterPro
  • regulation of pollen tube growth Source: UniProtKB
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Agamous-like MADS-box protein AGL30Curated
Gene namesi
Name:AGL301 Publication
Ordered Locus Names:At2g03060Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G03060.
TAIRilocus:2056760. AT2G03060.

Subcellular locationi

  • Nucleus PROSITE-ProRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004339661 – 386Agamous-like MADS-box protein AGL30Add BLAST386

Proteomic databases

PaxDbiQ1PFA4.

Expressioni

Tissue specificityi

Expressed in pollen.1 Publication

Gene expression databases

GenevisibleiQ1PFA4. AT.

Interactioni

Subunit structurei

Forms heterodimers with AGL66 and AGL104.1 Publication

GO - Molecular functioni

Protein-protein interaction databases

STRINGi3702.AT2G03060.2.

Structurei

3D structure databases

ProteinModelPortaliQ1PFA4.
SMRiQ1PFA4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 53MADS-boxPROSITE-ProRule annotationAdd BLAST53

Phylogenomic databases

eggNOGiKOG0014. Eukaryota.
COG5068. LUCA.
InParanoidiQ1PFA4.
OMAiQSMSWIL.
OrthoDBiEOG09360E9L.
PhylomeDBiQ1PFA4.

Family and domain databases

CDDicd00266. MADS_SRF_like. 1 hit.
Gene3Di3.40.1810.10. 1 hit.
InterProiView protein in InterPro
IPR033897. MADS_SRF-like.
IPR002100. TF_MADSbox.
PfamiView protein in Pfam
PF00319. SRF-TF. 1 hit.
PRINTSiPR00404. MADSDOMAIN.
SMARTiView protein in SMART
SM00432. MADS. 1 hit.
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiView protein in PROSITE
PS50066. MADS_BOX_2. 1 hit.

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.Curated
Isoform 1 (identifier: Q1PFA4-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MGRVKLKIKK LENTNGRQST FAKRKNGILK KANELSILCD IDIVLLMFSP
60 70 80 90 100
TGKAAICCGT RSSMEEVIAK FSQVTPQERT KRKFESLENL KKTFQKLDHD
110 120 130 140 150
VNIREFIASS NSTVEDLSTQ ARILQARISE IHGRLSYWTE PDKINNVEHL
160 170 180 190 200
GQLEISIRQS LDQLRAHKEH FGQQQQAMQI ENANFVKDWS TCSMQDGIQI
210 220 230 240 250
PLEQQLQSMS WILNSNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT
260 270 280 290 300
GKSPEMTIPG QETSFLDELN TGQLKQDTSS QQQFTNNNNI TAYNPNLHND
310 320 330 340 350
MNHHQTLPPP PLPLTLPHAQ VYIPMNQREY HMNGFFEAPP PDSSAYNDNT
360 370 380
NQTRFGSSSS SLPCSISMFD EYLFSQVTKT KLSQRF
Length:386
Mass (Da):43,789
Last modified:May 16, 2006 - v1
Checksum:i4817C1564A1F2E4B
GO

Sequence cautioni

The sequence AAC32924 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence ABK28481 differs from that shown. Reason: Erroneous termination at position 387. Translated as stop.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004138 Genomic DNA. Translation: AAC32924.2. Sequence problems.
CP002685 Genomic DNA. Translation: AEC05661.1.
DQ446459 mRNA. Translation: ABE65796.1.
DQ652954 mRNA. Translation: ABK28481.1. Sequence problems.
PIRiH84443.
RefSeqiNP_001318187.1. NM_001335152.1. [Q1PFA4-1]
UniGeneiAt.41433.

Genome annotation databases

EnsemblPlantsiAT2G03060.2; AT2G03060.2; AT2G03060. [Q1PFA4-1]
GeneIDi814835.
GrameneiAT2G03060.2; AT2G03060.2; AT2G03060.

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiAGL30_ARATH
AccessioniPrimary (citable) accession number: Q1PFA4
Secondary accession number(s): A0MEI3, O80619
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 14, 2015
Last sequence update: May 16, 2006
Last modified: August 30, 2017
This is version 91 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names