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Protein

Agamous-like MADS-box protein AGL30

Gene

AGL30

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth.1 Publication

GO - Molecular functioni

GO - Biological processi

  • pollen maturation Source: UniProtKB
  • positive regulation of transcription from RNA polymerase II promoter Source: InterPro
  • regulation of pollen tube growth Source: UniProtKB
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Agamous-like MADS-box protein AGL30Curated
Gene namesi
Name:AGL301 Publication
Ordered Locus Names:At2g03060Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G03060.

Subcellular locationi

  • Nucleus PROSITE-ProRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004339661 – 386Agamous-like MADS-box protein AGL30Add BLAST386

Proteomic databases

PaxDbiQ1PFA4.

Expressioni

Tissue specificityi

Expressed in pollen.1 Publication

Gene expression databases

ExpressionAtlasiQ1PFA4. baseline and differential.
GenevisibleiQ1PFA4. AT.

Interactioni

Subunit structurei

Forms heterodimers with AGL66 and AGL104.1 Publication

Protein-protein interaction databases

STRINGi3702.AT2G03060.2.

Structurei

3D structure databases

ProteinModelPortaliQ1PFA4.
SMRiQ1PFA4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 53MADS-boxPROSITE-ProRule annotationAdd BLAST53

Sequence similaritiesi

Contains 1 MADS-box domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0014. Eukaryota.
COG5068. LUCA.
InParanoidiQ1PFA4.
OMAiPQREVEC.
OrthoDBiEOG09360E9L.
PhylomeDBiQ1PFA4.

Family and domain databases

CDDicd00266. MADS_SRF_like. 1 hit.
InterProiIPR033897. MADS_SRF-like.
IPR002100. TF_MADSbox.
[Graphical view]
PfamiPF00319. SRF-TF. 1 hit.
[Graphical view]
PRINTSiPR00404. MADSDOMAIN.
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS50066. MADS_BOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.Curated
Isoform 1 (identifier: Q1PFA4-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MGRVKLKIKK LENTNGRQST FAKRKNGILK KANELSILCD IDIVLLMFSP
60 70 80 90 100
TGKAAICCGT RSSMEEVIAK FSQVTPQERT KRKFESLENL KKTFQKLDHD
110 120 130 140 150
VNIREFIASS NSTVEDLSTQ ARILQARISE IHGRLSYWTE PDKINNVEHL
160 170 180 190 200
GQLEISIRQS LDQLRAHKEH FGQQQQAMQI ENANFVKDWS TCSMQDGIQI
210 220 230 240 250
PLEQQLQSMS WILNSNTTNI VTEEHNSIPQ REVECSASSS FGSYPGYFGT
260 270 280 290 300
GKSPEMTIPG QETSFLDELN TGQLKQDTSS QQQFTNNNNI TAYNPNLHND
310 320 330 340 350
MNHHQTLPPP PLPLTLPHAQ VYIPMNQREY HMNGFFEAPP PDSSAYNDNT
360 370 380
NQTRFGSSSS SLPCSISMFD EYLFSQVTKT KLSQRF
Length:386
Mass (Da):43,789
Last modified:May 16, 2006 - v1
Checksum:i4817C1564A1F2E4B
GO

Sequence cautioni

The sequence AAC32924 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence ABK28481 differs from that shown. Reason: Erroneous termination at position 387. Translated as stop.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004138 Genomic DNA. Translation: AAC32924.2. Sequence problems.
CP002685 Genomic DNA. Translation: AEC05661.1.
DQ446459 mRNA. Translation: ABE65796.1.
DQ652954 mRNA. Translation: ABK28481.1. Sequence problems.
PIRiH84443.
UniGeneiAt.41433.

Genome annotation databases

EnsemblPlantsiAT2G03060.2; AT2G03060.2; AT2G03060. [Q1PFA4-1]
GrameneiAT2G03060.2; AT2G03060.2; AT2G03060.
KEGGiath:AT2G03060.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004138 Genomic DNA. Translation: AAC32924.2. Sequence problems.
CP002685 Genomic DNA. Translation: AEC05661.1.
DQ446459 mRNA. Translation: ABE65796.1.
DQ652954 mRNA. Translation: ABK28481.1. Sequence problems.
PIRiH84443.
UniGeneiAt.41433.

3D structure databases

ProteinModelPortaliQ1PFA4.
SMRiQ1PFA4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G03060.2.

Proteomic databases

PaxDbiQ1PFA4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G03060.2; AT2G03060.2; AT2G03060. [Q1PFA4-1]
GrameneiAT2G03060.2; AT2G03060.2; AT2G03060.
KEGGiath:AT2G03060.

Organism-specific databases

TAIRiAT2G03060.

Phylogenomic databases

eggNOGiKOG0014. Eukaryota.
COG5068. LUCA.
InParanoidiQ1PFA4.
OMAiPQREVEC.
OrthoDBiEOG09360E9L.
PhylomeDBiQ1PFA4.

Miscellaneous databases

PROiQ1PFA4.

Gene expression databases

ExpressionAtlasiQ1PFA4. baseline and differential.
GenevisibleiQ1PFA4. AT.

Family and domain databases

CDDicd00266. MADS_SRF_like. 1 hit.
InterProiIPR033897. MADS_SRF-like.
IPR002100. TF_MADSbox.
[Graphical view]
PfamiPF00319. SRF-TF. 1 hit.
[Graphical view]
PRINTSiPR00404. MADSDOMAIN.
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS50066. MADS_BOX_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiAGL30_ARATH
AccessioniPrimary (citable) accession number: Q1PFA4
Secondary accession number(s): A0MEI3, O80619
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 14, 2015
Last sequence update: May 16, 2006
Last modified: November 30, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.