ID   Y5547_ARATH             Reviewed;         280 AA.
AC   Q1PDT6; A0MFH8; Q8LC00;
DT   26-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT   16-MAY-2006, sequence version 1.
DT   08-NOV-2023, entry version 97.
DE   RecName: Full=B3 domain-containing protein At5g25470;
GN   OrderedLocusNames=At5g25470; ORFNames=T14C9.20;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130714; DOI=10.1038/35048507;
RA   Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA   Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA   Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA   Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA   Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA   O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA   Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA   Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA   Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA   Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA   Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA   Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA   Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA   Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA   Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA   Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA   McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA   Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA   Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA   Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA   Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA   Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA   Bevan M., Fransz P.F.;
RT   "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL   Nature 408:823-826(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
RA   Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
RT   "Simultaneous high-throughput recombinational cloning of open reading
RT   frames in closed and open configurations.";
RL   Plant Biotechnol. J. 4:317-324(2006).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA   Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA   Feldmann K.A.;
RT   "Full-length cDNA from Arabidopsis thaliana.";
RL   Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN   [5]
RP   GENE FAMILY.
RX   PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006;
RA   Swaminathan K., Peterson K., Jack T.;
RT   "The plant B3 superfamily.";
RL   Trends Plant Sci. 13:647-655(2008).
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAM63943.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC       Sequence=ABK28711.1; Type=Erroneous termination; Note=Extended C-terminus.; Evidence={ECO:0000305};
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DR   EMBL; AC006601; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; CP002688; AED93447.1; -; Genomic_DNA.
DR   EMBL; CP002688; AED93448.1; -; Genomic_DNA.
DR   EMBL; CP002688; ANM70434.1; -; Genomic_DNA.
DR   EMBL; DQ446982; ABE66179.1; -; mRNA.
DR   EMBL; DQ653304; ABK28711.1; ALT_SEQ; mRNA.
DR   EMBL; AY086898; AAM63943.1; ALT_INIT; mRNA.
DR   RefSeq; NP_001318648.1; NM_001343929.1.
DR   RefSeq; NP_568472.1; NM_122457.5.
DR   RefSeq; NP_851074.1; NM_180743.4.
DR   AlphaFoldDB; Q1PDT6; -.
DR   SMR; Q1PDT6; -.
DR   BioGRID; 17896; 4.
DR   IntAct; Q1PDT6; 3.
DR   PaxDb; 3702-AT5G25470-1; -.
DR   ProteomicsDB; 242838; -.
DR   EnsemblPlants; AT5G25470.1; AT5G25470.1; AT5G25470.
DR   EnsemblPlants; AT5G25470.2; AT5G25470.2; AT5G25470.
DR   EnsemblPlants; AT5G25470.3; AT5G25470.3; AT5G25470.
DR   GeneID; 832621; -.
DR   Gramene; AT5G25470.1; AT5G25470.1; AT5G25470.
DR   Gramene; AT5G25470.2; AT5G25470.2; AT5G25470.
DR   Gramene; AT5G25470.3; AT5G25470.3; AT5G25470.
DR   KEGG; ath:AT5G25470; -.
DR   Araport; AT5G25470; -.
DR   TAIR; AT5G25470; -.
DR   HOGENOM; CLU_080825_0_0_1; -.
DR   InParanoid; Q1PDT6; -.
DR   OMA; RETHGCA; -.
DR   OrthoDB; 655159at2759; -.
DR   PhylomeDB; Q1PDT6; -.
DR   PRO; PR:Q1PDT6; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   ExpressionAtlas; Q1PDT6; baseline and differential.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   CDD; cd10017; B3_DNA; 1.
DR   Gene3D; 2.40.330.10; DNA-binding pseudobarrel domain; 2.
DR   InterPro; IPR003340; B3_DNA-bd.
DR   InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR   PANTHER; PTHR31920; B3 DOMAIN-CONTAINING; 1.
DR   PANTHER; PTHR31920:SF125; TF-B3 DOMAIN-CONTAINING PROTEIN; 1.
DR   Pfam; PF02362; B3; 1.
DR   SMART; SM01019; B3; 2.
DR   SUPFAM; SSF101936; DNA-binding pseudobarrel domain; 2.
DR   PROSITE; PS50863; B3; 2.
DR   Genevisible; Q1PDT6; AT.
PE   2: Evidence at transcript level;
KW   DNA-binding; Nucleus; Reference proteome; Repeat; Transcription;
KW   Transcription regulation.
FT   CHAIN           1..280
FT                   /note="B3 domain-containing protein At5g25470"
FT                   /id="PRO_0000375156"
FT   DNA_BIND        20..114
FT                   /note="TF-B3 1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT   DNA_BIND        183..276
FT                   /note="TF-B3 2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT   REGION          122..153
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        138..153
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   CONFLICT        6
FT                   /note="A -> F (in Ref. 4; AAM63943)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   280 AA;  32023 MW;  C625336D3FE59861 CRC64;
     MLPRNATDKI QGNVSKPCFW KSLSPGQNWK SKSMRSFPEE FVKSTPGAFE HRVVFSVRWG
     NSWQLWLERE EKDLFMIEED WDEFVDDNHL GPNDNVFFRH DDKMFLEVQI FKNDGNEIID
     APPEVEPETE PFHPTTPKNS HKETTTASAS ASASEFSDNW RETHGCADIK NPELYLLNPK
     NPYFVKTLTK GNDVLYVPKT VIKKYGLKFG PHLSPMHYLL PGDKINGSTK IYGGGSAPCF
     NGWVDLCRKY NLKTGDSMVC ELERSGELVT AVRVHFINKT
//