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Q1PDT6 (Y5547_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 51. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
B3 domain-containing protein At5g25470
Gene names
Ordered Locus Names:At5g25470
ORF Names:T14C9.20
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length280 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Subcellular location

Nucleus By similarity.

Sequence similarities

Contains 2 TF-B3 DNA-binding domains.

Sequence caution

The sequence AAM63943.1 differs from that shown. Reason: Erroneous initiation.

The sequence ABK28711.1 differs from that shown. Reason: Erroneous termination at position 281. Translated as stop.

Ontologies

Keywords
   Biological processTranscription
Transcription regulation
   Cellular componentNucleus
   DomainRepeat
   LigandDNA-binding
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processregulation of transcription, DNA-templated

Inferred from electronic annotation. Source: UniProtKB-KW

transcription, DNA-templated

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentnucleus

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionDNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 280280B3 domain-containing protein At5g25470
PRO_0000375156

Regions

DNA binding20 – 11495TF-B3 1
DNA binding183 – 27694TF-B3 2

Experimental info

Sequence conflict61A → F in AAM63943. Ref.4

Sequences

Sequence LengthMass (Da)Tools
Q1PDT6 [UniParc].

Last modified May 16, 2006. Version 1.
Checksum: C625336D3FE59861

FASTA28032,023
        10         20         30         40         50         60 
MLPRNATDKI QGNVSKPCFW KSLSPGQNWK SKSMRSFPEE FVKSTPGAFE HRVVFSVRWG 

        70         80         90        100        110        120 
NSWQLWLERE EKDLFMIEED WDEFVDDNHL GPNDNVFFRH DDKMFLEVQI FKNDGNEIID 

       130        140        150        160        170        180 
APPEVEPETE PFHPTTPKNS HKETTTASAS ASASEFSDNW RETHGCADIK NPELYLLNPK 

       190        200        210        220        230        240 
NPYFVKTLTK GNDVLYVPKT VIKKYGLKFG PHLSPMHYLL PGDKINGSTK IYGGGSAPCF 

       250        260        270        280 
NGWVDLCRKY NLKTGDSMVC ELERSGELVT AVRVHFINKT 

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana."
Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K. expand/collapse author list , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.
Nature 408:823-826(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[3]"Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations."
Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.
Plant Biotechnol. J. 4:317-324(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[4]"Full-length cDNA from Arabidopsis thaliana."
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
[5]"The plant B3 superfamily."
Swaminathan K., Peterson K., Jack T.
Trends Plant Sci. 13:647-655(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENE FAMILY.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC006601 Genomic DNA. No translation available.
CP002688 Genomic DNA. Translation: AED93447.1.
CP002688 Genomic DNA. Translation: AED93448.1.
DQ446982 mRNA. Translation: ABE66179.1.
DQ653304 mRNA. Translation: ABK28711.1. Sequence problems.
AY086898 mRNA. Translation: AAM63943.1. Different initiation.
RefSeqNP_568472.1. NM_122457.4.
NP_851074.1. NM_180743.3.
UniGeneAt.19291.
At.23562.

3D structure databases

ProteinModelPortalQ1PDT6.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEQ1PDT6.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT5G25470.1; AT5G25470.1; AT5G25470.
AT5G25470.2; AT5G25470.2; AT5G25470.
GeneID832621.
KEGGath:AT5G25470.

Organism-specific databases

TAIRAT5G25470.

Phylogenomic databases

eggNOGNOG322272.
HOGENOMHOG000155371.
OMARETHGCA.
PhylomeDBQ1PDT6.

Gene expression databases

GenevestigatorQ1PDT6.

Family and domain databases

Gene3D2.40.330.10. 2 hits.
InterProIPR003340. B3_DNA-bd.
IPR015300. DNA-bd_pseudobarrel.
[Graphical view]
PfamPF02362. B3. 1 hit.
[Graphical view]
SMARTSM01019. B3. 2 hits.
[Graphical view]
SUPFAMSSF101936. SSF101936. 2 hits.
PROSITEPS50863. B3. 2 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameY5547_ARATH
AccessionPrimary (citable) accession number: Q1PDT6
Secondary accession number(s): A0MFH8, Q8LC00
Entry history
Integrated into UniProtKB/Swiss-Prot: May 26, 2009
Last sequence update: May 16, 2006
Last modified: June 11, 2014
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names