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Protein

B3 domain-containing protein At5g25470

Gene

At5g25470

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi20 – 11495TF-B3 1PROSITE-ProRule annotationAdd
BLAST
DNA bindingi183 – 27694TF-B3 2PROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: UniProtKB-KW
  2. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
B3 domain-containing protein At5g25470
Gene namesi
Ordered Locus Names:At5g25470
ORF Names:T14C9.20
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 5

Organism-specific databases

TAIRiAT5G25470.

Subcellular locationi

Nucleus PROSITE-ProRule annotation

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 280280B3 domain-containing protein At5g25470PRO_0000375156Add
BLAST

Proteomic databases

PRIDEiQ1PDT6.

Expressioni

Gene expression databases

GenevestigatoriQ1PDT6.

Structurei

3D structure databases

ProteinModelPortaliQ1PDT6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 2 TF-B3 DNA-binding domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiNOG322272.
HOGENOMiHOG000155371.
InParanoidiQ1PDT6.
OMAiFLEVQIF.
PhylomeDBiQ1PDT6.

Family and domain databases

Gene3Di2.40.330.10. 2 hits.
InterProiIPR003340. B3_DNA-bd.
IPR015300. DNA-bd_pseudobarrel.
[Graphical view]
PfamiPF02362. B3. 1 hit.
[Graphical view]
SMARTiSM01019. B3. 2 hits.
[Graphical view]
SUPFAMiSSF101936. SSF101936. 2 hits.
PROSITEiPS50863. B3. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1PDT6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MLPRNATDKI QGNVSKPCFW KSLSPGQNWK SKSMRSFPEE FVKSTPGAFE
60 70 80 90 100
HRVVFSVRWG NSWQLWLERE EKDLFMIEED WDEFVDDNHL GPNDNVFFRH
110 120 130 140 150
DDKMFLEVQI FKNDGNEIID APPEVEPETE PFHPTTPKNS HKETTTASAS
160 170 180 190 200
ASASEFSDNW RETHGCADIK NPELYLLNPK NPYFVKTLTK GNDVLYVPKT
210 220 230 240 250
VIKKYGLKFG PHLSPMHYLL PGDKINGSTK IYGGGSAPCF NGWVDLCRKY
260 270 280
NLKTGDSMVC ELERSGELVT AVRVHFINKT
Length:280
Mass (Da):32,023
Last modified:May 16, 2006 - v1
Checksum:iC625336D3FE59861
GO

Sequence cautioni

The sequence AAM63943.1 differs from that shown. Reason: Erroneous initiation. Curated
The sequence ABK28711.1 differs from that shown. Reason: Erroneous termination at position 281. Translated as stop.Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti6 – 61A → F in AAM63943. 1 PublicationCurated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006601 Genomic DNA. No translation available.
CP002688 Genomic DNA. Translation: AED93447.1.
CP002688 Genomic DNA. Translation: AED93448.1.
DQ446982 mRNA. Translation: ABE66179.1.
DQ653304 mRNA. Translation: ABK28711.1. Sequence problems.
AY086898 mRNA. Translation: AAM63943.1. Different initiation.
RefSeqiNP_568472.1. NM_122457.4.
NP_851074.1. NM_180743.3.
UniGeneiAt.19291.
At.23562.

Genome annotation databases

EnsemblPlantsiAT5G25470.1; AT5G25470.1; AT5G25470.
AT5G25470.2; AT5G25470.2; AT5G25470.
GeneIDi832621.
KEGGiath:AT5G25470.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006601 Genomic DNA. No translation available.
CP002688 Genomic DNA. Translation: AED93447.1.
CP002688 Genomic DNA. Translation: AED93448.1.
DQ446982 mRNA. Translation: ABE66179.1.
DQ653304 mRNA. Translation: ABK28711.1. Sequence problems.
AY086898 mRNA. Translation: AAM63943.1. Different initiation.
RefSeqiNP_568472.1. NM_122457.4.
NP_851074.1. NM_180743.3.
UniGeneiAt.19291.
At.23562.

3D structure databases

ProteinModelPortaliQ1PDT6.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiQ1PDT6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G25470.1; AT5G25470.1; AT5G25470.
AT5G25470.2; AT5G25470.2; AT5G25470.
GeneIDi832621.
KEGGiath:AT5G25470.

Organism-specific databases

TAIRiAT5G25470.

Phylogenomic databases

eggNOGiNOG322272.
HOGENOMiHOG000155371.
InParanoidiQ1PDT6.
OMAiFLEVQIF.
PhylomeDBiQ1PDT6.

Gene expression databases

GenevestigatoriQ1PDT6.

Family and domain databases

Gene3Di2.40.330.10. 2 hits.
InterProiIPR003340. B3_DNA-bd.
IPR015300. DNA-bd_pseudobarrel.
[Graphical view]
PfamiPF02362. B3. 1 hit.
[Graphical view]
SMARTiSM01019. B3. 2 hits.
[Graphical view]
SUPFAMiSSF101936. SSF101936. 2 hits.
PROSITEiPS50863. B3. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana."
    Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.
    , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.
    Nature 408:823-826(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations."
    Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.
    Plant Biotechnol. J. 4:317-324(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Full-length cDNA from Arabidopsis thaliana."
    Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
  5. Cited for: GENE FAMILY.

Entry informationi

Entry nameiY5547_ARATH
AccessioniPrimary (citable) accession number: Q1PDT6
Secondary accession number(s): A0MFH8, Q8LC00
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 26, 2009
Last sequence update: May 16, 2006
Last modified: January 7, 2015
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.