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Q1PDT6

- Y5547_ARATH

UniProt

Q1PDT6 - Y5547_ARATH

Protein

B3 domain-containing protein At5g25470

Gene

At5g25470

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 52 (01 Oct 2014)
      Sequence version 1 (16 May 2006)
      Previous versions | rss
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    Functioni

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    DNA bindingi20 – 11495TF-B3 1PROSITE-ProRule annotationAdd
    BLAST
    DNA bindingi183 – 27694TF-B3 2PROSITE-ProRule annotationAdd
    BLAST

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW

    GO - Biological processi

    1. regulation of transcription, DNA-templated Source: UniProtKB-KW
    2. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    B3 domain-containing protein At5g25470
    Gene namesi
    Ordered Locus Names:At5g25470
    ORF Names:T14C9.20
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 5

    Organism-specific databases

    TAIRiAT5G25470.

    Subcellular locationi

    Nucleus PROSITE-ProRule annotation

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Nucleus

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 280280B3 domain-containing protein At5g25470PRO_0000375156Add
    BLAST

    Proteomic databases

    PRIDEiQ1PDT6.

    Expressioni

    Gene expression databases

    GenevestigatoriQ1PDT6.

    Structurei

    3D structure databases

    ProteinModelPortaliQ1PDT6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains 2 TF-B3 DNA-binding domains.PROSITE-ProRule annotation

    Keywords - Domaini

    Repeat

    Phylogenomic databases

    eggNOGiNOG322272.
    HOGENOMiHOG000155371.
    OMAiRETHGCA.
    PhylomeDBiQ1PDT6.

    Family and domain databases

    Gene3Di2.40.330.10. 2 hits.
    InterProiIPR003340. B3_DNA-bd.
    IPR015300. DNA-bd_pseudobarrel.
    [Graphical view]
    PfamiPF02362. B3. 1 hit.
    [Graphical view]
    SMARTiSM01019. B3. 2 hits.
    [Graphical view]
    SUPFAMiSSF101936. SSF101936. 2 hits.
    PROSITEiPS50863. B3. 2 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q1PDT6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MLPRNATDKI QGNVSKPCFW KSLSPGQNWK SKSMRSFPEE FVKSTPGAFE    50
    HRVVFSVRWG NSWQLWLERE EKDLFMIEED WDEFVDDNHL GPNDNVFFRH 100
    DDKMFLEVQI FKNDGNEIID APPEVEPETE PFHPTTPKNS HKETTTASAS 150
    ASASEFSDNW RETHGCADIK NPELYLLNPK NPYFVKTLTK GNDVLYVPKT 200
    VIKKYGLKFG PHLSPMHYLL PGDKINGSTK IYGGGSAPCF NGWVDLCRKY 250
    NLKTGDSMVC ELERSGELVT AVRVHFINKT 280
    Length:280
    Mass (Da):32,023
    Last modified:May 16, 2006 - v1
    Checksum:iC625336D3FE59861
    GO

    Sequence cautioni

    The sequence AAM63943.1 differs from that shown. Reason: Erroneous initiation.
    The sequence ABK28711.1 differs from that shown. Reason: Erroneous termination at position 281. Translated as stop.

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti6 – 61A → F in AAM63943. 1 PublicationCurated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC006601 Genomic DNA. No translation available.
    CP002688 Genomic DNA. Translation: AED93447.1.
    CP002688 Genomic DNA. Translation: AED93448.1.
    DQ446982 mRNA. Translation: ABE66179.1.
    DQ653304 mRNA. Translation: ABK28711.1. Sequence problems.
    AY086898 mRNA. Translation: AAM63943.1. Different initiation.
    RefSeqiNP_568472.1. NM_122457.4.
    NP_851074.1. NM_180743.3.
    UniGeneiAt.19291.
    At.23562.

    Genome annotation databases

    EnsemblPlantsiAT5G25470.1; AT5G25470.1; AT5G25470.
    AT5G25470.2; AT5G25470.2; AT5G25470.
    GeneIDi832621.
    KEGGiath:AT5G25470.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC006601 Genomic DNA. No translation available.
    CP002688 Genomic DNA. Translation: AED93447.1 .
    CP002688 Genomic DNA. Translation: AED93448.1 .
    DQ446982 mRNA. Translation: ABE66179.1 .
    DQ653304 mRNA. Translation: ABK28711.1 . Sequence problems.
    AY086898 mRNA. Translation: AAM63943.1 . Different initiation.
    RefSeqi NP_568472.1. NM_122457.4.
    NP_851074.1. NM_180743.3.
    UniGenei At.19291.
    At.23562.

    3D structure databases

    ProteinModelPortali Q1PDT6.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi Q1PDT6.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT5G25470.1 ; AT5G25470.1 ; AT5G25470 .
    AT5G25470.2 ; AT5G25470.2 ; AT5G25470 .
    GeneIDi 832621.
    KEGGi ath:AT5G25470.

    Organism-specific databases

    TAIRi AT5G25470.

    Phylogenomic databases

    eggNOGi NOG322272.
    HOGENOMi HOG000155371.
    OMAi RETHGCA.
    PhylomeDBi Q1PDT6.

    Gene expression databases

    Genevestigatori Q1PDT6.

    Family and domain databases

    Gene3Di 2.40.330.10. 2 hits.
    InterProi IPR003340. B3_DNA-bd.
    IPR015300. DNA-bd_pseudobarrel.
    [Graphical view ]
    Pfami PF02362. B3. 1 hit.
    [Graphical view ]
    SMARTi SM01019. B3. 2 hits.
    [Graphical view ]
    SUPFAMi SSF101936. SSF101936. 2 hits.
    PROSITEi PS50863. B3. 2 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana."
      Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.
      , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.
      Nature 408:823-826(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    3. "Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations."
      Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.
      Plant Biotechnol. J. 4:317-324(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    4. "Full-length cDNA from Arabidopsis thaliana."
      Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
      Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    5. Cited for: GENE FAMILY.

    Entry informationi

    Entry nameiY5547_ARATH
    AccessioniPrimary (citable) accession number: Q1PDT6
    Secondary accession number(s): A0MFH8, Q8LC00
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 26, 2009
    Last sequence update: May 16, 2006
    Last modified: October 1, 2014
    This is version 52 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3