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Protein
Submitted name:

Putative type III secretion protein YscC

Gene

YscC

Organism
Lawsonia intracellularis (strain PHE/MN1-00)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

TransportUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Putative type III secretion protein YscCImported
Gene namesi
Name:YscCImported
Ordered Locus Names:LI1160Imported
OrganismiLawsonia intracellularis (strain PHE/MN1-00)Imported
Taxonomic identifieri363253 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeLawsonia
Proteomesi
  • UP000002430 Componenti: Chromosome

Subcellular locationi

  • Cell outer membrane UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi363253.LI1160.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini171 – 285Secretin_NInterPro annotationAdd BLAST115

Sequence similaritiesi

Belongs to the GSP D family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105GVR. Bacteria.
COG1450. LUCA.
HOGENOMiHOG000228558.
KOiK03219.
OMAiNAVIVHD.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.

Sequencei

Sequence statusi: Complete.

Q1MP63-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKVLFYILLW SILFIHLVSV SKAETLFSYL YTHYSEQESL GSLLTDFAFT
60 70 80 90 100
QGYSAIISPA VRGNVSGFFK DENPYQFLEG MRSAFGVMWY MLGKTMYFYT
110 120 130 140 150
QAELQRVFIS PQVMTVERLY HILLNSSVIS PQLPIQLNGD MIILSGPPHY
160 170 180 190 200
IEQVLQAVSI FEVSQLSNIT MRVFPLKYAS ADDIVIQSMD KTVTVPGIAS
210 220 230 240 250
ILRAMLNGQQ ETATTIVEQP ATVNKLNGEG LASKGKEKTE KGNEVKQQAA
260 270 280 290 300
GVNIMADPRM NAVVINDAAY RMPYYEEVIH DLDKPLELVE IHAAIVDIDS
310 320 330 340 350
EFKRDLGFTL QQGSSKKSMT MGGDFSTTQQ SLPLEITKGT VEGGGLTYST
360 370 380 390 400
IYSKGVEFFL ARVQALETEG EARVLGKPSV LTVDNIQATL ENTSTYYIQV
410 420 430 440 450
QGYQTVDLFK VESGTVLRVT PHIIYNNDGT KSIKLVVAIE DNQNDNSTDP
460 470 480 490 500
TVGSNVVLPP IKQTRINTQG VVNTGQSLLI GGYYYEQQGV NDKGIPILKD
510 520 530 540 550
IPIIGYLFKT NTKTSKKMER LILITPRIIM PNTVTPIPAH VDDPSFHRSA
560 570 580
VQDTYDDIKP KSSTGGGCSR KRRAPVIEEQ RLG
Length:583
Mass (Da):64,670
Last modified:May 30, 2006 - v1
Checksum:i90C89DD6E7195A39
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180252 Genomic DNA. Translation: CAJ55214.1.

Genome annotation databases

KEGGilip:LI1160.
PATRICi22305893. VBILawInt40445_1253.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180252 Genomic DNA. Translation: CAJ55214.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi363253.LI1160.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

KEGGilip:LI1160.
PATRICi22305893. VBILawInt40445_1253.

Phylogenomic databases

eggNOGiENOG4105GVR. Bacteria.
COG1450. LUCA.
HOGENOMiHOG000228558.
KOiK03219.
OMAiNAVIVHD.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ1MP63_LAWIP
AccessioniPrimary (citable) accession number: Q1MP63
Entry historyi
Integrated into UniProtKB/TrEMBL: May 30, 2006
Last sequence update: May 30, 2006
Last modified: November 2, 2016
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.