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Protein
Submitted name:

Putative transcriptional regulator

Gene

pRL110558

Organism
Rhizobium leguminosarum bv. viciae (strain 3841)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Enzyme and pathway databases

BioCyciRLEG216596:GKE5-6181-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative transcriptional regulatorImported
Gene namesi
Ordered Locus Names:pRL110558Imported
Encoded oniPlasmid pRL11Imported
OrganismiRhizobium leguminosarum bv. viciae (strain 3841)Imported
Taxonomic identifieri216596 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
Proteomesi
  • UP000006575 Componenti: Plasmid pRL11

Structurei

3D structure databases

ProteinModelPortaliQ1M5H8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini60 – 11455HTH cro/C1-type DNA-bindingInterPro annotationAdd
BLAST

Phylogenomic databases

HOGENOMiHOG000263465.
OMAiTEKGHTY.
OrthoDBiPOG091H054U.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
2.60.120.10. 1 hit.
InterProiIPR001387. Cro/C1-type_HTH.
IPR013096. Cupin_2.
IPR010982. Lambda_DNA-bd_dom.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF07883. Cupin_2. 1 hit.
PF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
SSF51182. SSF51182. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1M5H8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTIGLPLDKR DGGRGKSMKS RREAAEQPEQ AGGRAPFSQD PHAVREPKEN
60 70 80 90 100
NLEMAIGHEV RAYRKKLGIT VTDLAAATGI SLGMLSKIEN GNISPSLTTL
110 120 130 140 150
QSLSRALGVP LTAFFRRFEE PRNAVFVKAG QGIELERRGT RAGHQYNVLG
160 170 180 190 200
HIDNNTSGVI VEPYLITLTT DSDIFPTFQH EGMEFLYMLE GEVVYRHGDQ
210 220 230 240
LFQMQPGDSL FFDADAPHGP EQLVKLPSKY LSIISYPQQS SKS
Length:243
Mass (Da):26,857
Last modified:May 30, 2006 - v1
Checksum:iCBDAD112805A29CD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM236085 Genomic DNA. Translation: CAK03511.1.

Genome annotation databases

EnsemblBacteriaiCAK03511; CAK03511; pRL110558.
KEGGirle:pRL110558.
PATRICi23149019. VBIRhiLeg32091_7406.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM236085 Genomic DNA. Translation: CAK03511.1.

3D structure databases

ProteinModelPortaliQ1M5H8.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAK03511; CAK03511; pRL110558.
KEGGirle:pRL110558.
PATRICi23149019. VBIRhiLeg32091_7406.

Phylogenomic databases

HOGENOMiHOG000263465.
OMAiTEKGHTY.
OrthoDBiPOG091H054U.

Enzyme and pathway databases

BioCyciRLEG216596:GKE5-6181-MONOMER.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
2.60.120.10. 1 hit.
InterProiIPR001387. Cro/C1-type_HTH.
IPR013096. Cupin_2.
IPR010982. Lambda_DNA-bd_dom.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF07883. Cupin_2. 1 hit.
PF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
SSF51182. SSF51182. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ1M5H8_RHIL3
AccessioniPrimary (citable) accession number: Q1M5H8
Entry historyi
Integrated into UniProtKB/TrEMBL: May 30, 2006
Last sequence update: May 30, 2006
Last modified: September 7, 2016
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported, PlasmidImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.