Q1M3D9 (Q1M3D9_RHIL3) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative LacI family transcriptional regulator EMBL CAK12386.1

Gene names

Ordered Locus Names:

pRL120677 EMBL CAK12386.1

Encoded on

Plasmid pRL12

Organism

Rhizobium leguminosarum bv. viciae (strain 3841) [Complete proteome] [HAMAP] EMBL CAK12386.1

Taxonomic identifier

216596 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Rhizobium › Rhizobium leguminosarum › Rhizobium leguminosarum bv. viciae

Protein attributes

Sequence length	335 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH lacI-type DNA-binding domain. SAAS SAAS000843

Ontologies

Keywords
Biological process	Transcription Transcription regulation SAAS SAAS000843 RuleBase RU000708
Ligand	DNA-binding SAAS SAAS000843 RuleBase RU000708
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q1M3D9 [UniParc]. Last modified May 30, 2006. Version 1. Checksum: 2FC16A22D44FA431	FASTA	335	36,448
	10 20 30 40 50 60 MTTIRDVARL AGVSISTVSL ALNSPKRVGV ETLDRIQQAI KSTGYRIDPV AQTLARGRSS 70 80 90 100 110 120 LIGFVSANLG NMFFGDIRRE IEHQALDHGY FVLIADSSGR ADLERALLER LEAQKIAGIA 130 140 150 160 170 180 LAANGHGEEY ATFLRDFKTP IVMFDQKVEG AERDFVGSDN PLTTTILTEH LLQLGHRRIG 190 200 210 220 230 240 FISGPSGLHT ADERLKGFMN TMAGAGVDID PSLVVEGGYT RTGGHAQAMR LLTRRDRPTA 250 260 270 280 290 300 IIGANNMTGL AALQVMQEMG FRCPDDVSLA MVDDVPWSNV ITPRITMVVQ DAQKLGELAA 310 320 330 QRLLARIASP EGAAEPPQDF ILTPRFVRGE STRRL

References

[1]

"The genome of Rhizobium leguminosarum has recognizable core and accessory components." Young J.W., Crossman L.C., Johnston A.W.B., Thomson N.R., Ghazoui Z.F., Hull K.H., Wexler M., Curson A.R.J., Todd J.D., Poole P.S., Mauchline T.H., East A.K., Quail M.A., Churcher C., Arrowsmith C., Cherevach A., Chillingworth T., Clarke K. , Cronin A., Davis P., Fraser A., Hance Z., Hauser H., Jagels K., Moule S., Mungall K., Norbertczak H., Rabbinowitsch E., Sanders M., Simmonds M., Whitehead S., Parkhill J. Genome Biol. 7:R34-R34(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 3841 EMBL CAK12386.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM236086 Genomic DNA. Translation: CAK12386.1.
RefSeq	YP_765181.1. NC_008378.1.
3D structure databases
ProteinModelPortal	Q1M3D9.
ModBase	Search...
Protein-protein interaction databases
STRING	216596.pRL120677.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAK12386; CAK12386; pRL120677.
GeneID	4398036.
KEGG	rle:pRL120677.
PATRIC	23135437. VBIRhiLeg32091_0680.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1609.
HOGENOM	HOG000220180.
KO	K02529.
OMA	FVLIADS.
ProtClustDB	CLSK772561.
Enzyme and pathway databases
BioCyc	RLEG216596:GKE5-5492-MONOMER.
Family and domain databases
Gene3D	1.10.260.40. 1 hit.
InterPro	IPR010982. Lambda_DNA-bd_dom. IPR000843. Tscrpt_reg_HTH_LacI. [Graphical view]
Pfam	PF00356. LacI. 1 hit. [Graphical view]
PRINTS	PR00036. HTHLACI.
SMART	SM00354. HTH_LACI. 1 hit. [Graphical view]
SUPFAM	SSF47413. Lambda_like_DNA. 1 hit.
PROSITE	PS00356. HTH_LACI_1. 1 hit. PS50932. HTH_LACI_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q1M3D9_RHIL3

Accession

Primary (citable) accession number: Q1M3D9

Entry history

Integrated into UniProtKB/TrEMBL:	May 30, 2006
Last sequence update:	May 30, 2006
Last modified:	May 29, 2013
This is version 51 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)