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Q1LWP9 (Q1LWP9_DANRE) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 62. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Novel protein similar to vertebrate sialidase 1 (Lysosomal sialidase) (NEU1) EMBL CAK04566.1

Uncharacterized protein Ensembl ENSDARP00000015727
Gene names
Name:neu1 ZFIN ZDB-GENE-060503-592 Ensembl ENSDARP00000015727 EMBL AAI33833.1
Synonyms:si:ch211-222e23.1 ZFIN ZDB-GENE-060503-592
ORF Names:CH211-222E23.1-001 EMBL CAK04566.1
OrganismDanio rerio (Zebrafish) (Brachydanio rerio) [Reference proteome]
Taxonomic identifier7955 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Protein attributes

Sequence length383 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Molecular_functionexo-alpha-sialidase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q1LWP9 [UniParc].

Last modified May 30, 2006. Version 1.
Checksum: 188A60BA1612D610

FASTA38342,145
        10         20         30         40         50         60 
MDFIRQIGIL LGIAVLSSAR ADKTQIDPLI YEEQLLWVSG GAGQVNAYRI PLLTFTLRGS 

        70         80         90        100        110        120 
LLAFSEARKM SSSDIGAKFI ALRRSTDRGA TWSPTSFIVD DGSLADGLSL GSVVVDEETG 

       130        140        150        160        170        180 
AVIIIYSLCF HQYQCSPSST MMVQSLDDGF TWSVPRNLSI ELGVKSFAPG PGFGIQKRYP 

       190        200        210        220        230        240 
PSKGRLVVCG HGTIAGDGVF CILSDDHGRS WRYGAALKSI PYNQPKQDLD FNPDECQPVE 

       250        260        270        280        290        300 
LEDGSIVINV RNQNNYHCRC RIIVRSLDGG ESLPVEELVF DKTLIDPVVA AGALQKQGVM 

       310        320        330        340        350        360 
YFTNPSSTQH RVNLTLRWSF TDGKSWEKEA VQIWAGPSGY STMTSLKGGS AEDNKYIFVV 

       370        380 
YEKGHKDYWE TISFAKIHLY GGK 

« Hide

References

« Hide 'large scale' references
[1]NIH - Zebrafish Gene Collection (ZGC) project
Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Ovary EMBL AAI33833.1.
[2]Woodmansey R.
Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[3]Ensembl
Submitted (FEB-2012) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Tuebingen Ensembl ENSDARP00000015727.
[4]"The zebrafish reference genome sequence and its relationship to the human genome."
Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J. expand/collapse author list , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Tuebingen Ensembl ENSDARP00000015727.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FP085398 Genomic DNA. No translation available.
BC133832 mRNA. Translation: AAI33833.1.
BX537337 Genomic DNA. Translation: CAK04566.1.
RefSeqNP_001038374.1. NM_001044909.2.
UniGeneDr.79166.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING7955.ENSDARP00000015727.

Protein family/group databases

CAZyGH33. Glycoside Hydrolase Family 33.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSDART00000002464; ENSDARP00000015727; ENSDARG00000008832.
GeneID559850.
KEGGdre:559850.

Organism-specific databases

CTD4758.
ZFINZDB-GENE-060503-592. neu1.

Phylogenomic databases

eggNOGCOG4409.
GeneTreeENSGT00720000108878.
HOGENOMHOG000007651.
HOVERGENHBG057314.
InParanoidQ1LWP9.
KOK01186.
OMAGTEMFAP.
OrthoDBEOG779NXT.
TreeFamTF331063.

Family and domain databases

Gene3D2.120.10.10. 1 hit.
InterProIPR026856. Sialidase_fam.
IPR011040. Sialidases.
[Graphical view]
PANTHERPTHR10628. PTHR10628. 1 hit.
SUPFAMSSF50939. SSF50939. 1 hit.
ProtoNetSearch...

Other

NextBio20883171.
PROQ1LWP9.

Entry information

Entry nameQ1LWP9_DANRE
AccessionPrimary (citable) accession number: Q1LWP9
Entry history
Integrated into UniProtKB/TrEMBL: May 30, 2006
Last sequence update: May 30, 2006
Last modified: May 14, 2014
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)