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Protein
Submitted name:

Novel protein similar to vertebrate dynein, cytoplasmic, light intermediate polypeptide 2 (DNCLI2)

Gene

dync1li1

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Novel protein similar to vertebrate dynein, cytoplasmic, light intermediate polypeptide 2 (DNCLI2)Imported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:dync1li1Imported
ORF Names:DKEY-63J1.8-001Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 19

Organism-specific databases

ZFINiZDB-GENE-030131-4108. dync1li1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000052858.

Family & Domainsi

Phylogenomic databases

eggNOGiKOG3905. Eukaryota.
ENOG410XQS4. LUCA.
GeneTreeiENSGT00390000008295.
HOGENOMiHOG000236263.
HOVERGENiHBG005546.
KOiK10416.
OMAiRCNAWVL.
PhylomeDBiQ1LUM9.
TreeFamiTF352602.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR008467. Dynein1_light_intermed_chain.
IPR022780. Dynein_light_int_chain.
IPR027417. P-loop_NTPase.
[Graphical view]
PANTHERiPTHR12688. PTHR12688. 1 hit.
PfamiPF05783. DLIC. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.

Sequencei

Sequence statusi: Complete.

Q1LUM9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATTGRNTLL SVSTNVNNST SESQNPEEED GQNLWSSILS EVSTRSRSKL
60 70 80 90 100
PSGKNVVVMG EVGSGKTTLV AKLQGVEEYM KGRGLEYLYF NVHDDDIDDQ
110 120 130 140 150
SRCNAWVLDG DLYHKGLQKF AISLENLEDS LILFVVDLSR PWLALDSLQK
160 170 180 190 200
WGSVVRDFVD KLRVPPETMR ELEHRLTKQF QEYVEPGSDL DAVPQRRNPE
210 220 230 240 250
SDEESVLLPL GENTLTHNLG LPIVVVCTKC DAISTLEKEH DYKDEHLDFI
260 270 280 290 300
QSHIRRFCLQ YGAALLYTSM KENKNLDLLY KYLVHRLYGF PFNSPAQVVE
310 320 330 340 350
KDSVFIPSGW DNEKKIAILH ENFQMVKAED SFEDVIVKPP VRKFVHEKEV
360 370 380 390 400
QAEDDQVFLV KLQSLLSKQP PVTAGRPVDP TNRAPTGSPR TTNRSAAANV
410 420 430 440 450
ANVMPMQSGT KKIDPNMKGG QTSEGVLANF FNSLLTKKAG SPGPGGQPAG
460 470 480 490 500
GGSNTPGTVR KSGSKLGLTD VQAELDRISN KSDLDSSAPN ATTPPAENDK

S
Length:501
Mass (Da):55,372
Last modified:May 30, 2006 - v1
Checksum:i38A44BBAD0F6D766
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FP085415 Genomic DNA. No translation available.
BX511164, BX927411 Genomic DNA. Translation: CAM56699.1.
RefSeqiNP_001095898.1. NM_001102428.1.
UniGeneiDr.107342.

Genome annotation databases

EnsembliENSDART00000167951; ENSDARP00000138705; ENSDARG00000098317.
GeneIDi556103.
KEGGidre:556103.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FP085415 Genomic DNA. No translation available.
BX511164, BX927411 Genomic DNA. Translation: CAM56699.1.
RefSeqiNP_001095898.1. NM_001102428.1.
UniGeneiDr.107342.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000052858.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000167951; ENSDARP00000138705; ENSDARG00000098317.
GeneIDi556103.
KEGGidre:556103.

Organism-specific databases

CTDi51143.
ZFINiZDB-GENE-030131-4108. dync1li1.

Phylogenomic databases

eggNOGiKOG3905. Eukaryota.
ENOG410XQS4. LUCA.
GeneTreeiENSGT00390000008295.
HOGENOMiHOG000236263.
HOVERGENiHBG005546.
KOiK10416.
OMAiRCNAWVL.
PhylomeDBiQ1LUM9.
TreeFamiTF352602.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR008467. Dynein1_light_intermed_chain.
IPR022780. Dynein_light_int_chain.
IPR027417. P-loop_NTPase.
[Graphical view]
PANTHERiPTHR12688. PTHR12688. 1 hit.
PfamiPF05783. DLIC. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Barker G.
    Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "The zebrafish reference genome sequence and its relationship to the human genome."
    Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
    , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G., Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C., Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
    Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TuebingenImported.
  3. Ensembl
    Submitted (NOV-2015) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: TuebingenImported.

Entry informationi

Entry nameiQ1LUM9_DANRE
AccessioniPrimary (citable) accession number: Q1LUM9
Entry historyi
Integrated into UniProtKB/TrEMBL: May 30, 2006
Last sequence update: May 30, 2006
Last modified: June 8, 2016
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.