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Q1LPI7 (Q1LPI7_RALME) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
2-dehydro-3-deoxyphosphooctonate aldolase 1 HAMAP MF_00056
EC=2.5.1.55 HAMAP MF_00056
Alternative name(s):
3-deoxy-D-manno-octulosonic acid 8-phosphate synthase 1 HAMAP MF_00056
KDO-8-phosphate synthase 1 HAMAP MF_00056
Phospho-2-dehydro-3-deoxyoctonate aldolase 1 HAMAP MF_00056
Gene names
Name:kdsA EMBL ABF07939.1
Synonyms:kdsA1 HAMAP MF_00056
Ordered Locus Names:Rmet_1053
OrganismRalstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) [Complete proteome] [HAMAP]
Taxonomic identifier266264 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Cupriavidus

Protein attributes

Sequence length289 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Phosphoenolpyruvate + D-arabinose 5-phosphate + H2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate. HAMAP MF_00056

Pathway

Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis. HAMAP MF_00056

Carbohydrate biosynthesis; 3-deoxy-D-manno-octulosonate biosynthesis; 3-deoxy-D-manno-octulosonate from D-ribulose 5-phosphate: step 2/3. HAMAP MF_00056

Subcellular location

Cytoplasm By similarity HAMAP MF_00056.

Sequence similarities

Belongs to the KdsA family. HAMAP MF_00056

Ontologies

Keywords
   Biological processLipopolysaccharide biosynthesis HAMAP MF_00056
   Cellular componentCytoplasm HAMAP MF_00056
   Molecular functionTransferase HAMAP MF_00056 EMBL ABF07939.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processketo-3-deoxy-D-manno-octulosonic acid biosynthetic process

Inferred from electronic annotation. Source: HAMAP

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular function3-deoxy-8-phosphooctulonate synthase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q1LPI7 [UniParc].

Last modified May 30, 2006. Version 1.
Checksum: 70585766C05A1979

FASTA28931,004
        10         20         30         40         50         60 
MKLCGFDVGL DKPFFLIAGP CVIESEQMAL DTAGELKAIT GELGIPFIYK SSFDKANRSS 

        70         80         90        100        110        120 
GKSFRGLGME KGLEILATVK RQIGVPVLTD IHEIDEIKPV AAVVDVLQTP AFLCRQTDFI 

       130        140        150        160        170        180 
RACAQSGKPV NIKKGQFLAP HDMKNVIDKA RDAAREAGLP DDVFMACERG VSFGYNNLVS 

       190        200        210        220        230        240 
DMRSLAIMRE TGAPVVFDAT HSVQLPGGQG TSSGGQREFV PVLSRAAVAT GVAGLFMETH 

       250        260        270        280 
PDPSKAMSDG PNAVPLSRMK ELLTVLRDLD GMVKRAGFLE DNFGWPACA

« Hide

References

[1]"Complete sequence of the chromosome of Ralstonia metallidurans CH34."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Martinez M., Goltsman E., Pitluck S., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Kim E., Mergeay M., Benotmane M.A., Vallaeys T., Michaux A., Monchy S., Dunn J., McCorkle S., Taghavi S., van der Lelie D., Richardson P.
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CH34 / ATCC 43123 / DSM 2839.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000352 Genomic DNA. Translation: ABF07939.1.
RefSeqYP_583208.1. NC_007973.1.

3D structure databases

ProteinModelPortalQ1LPI7.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ1LPI7.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4037850.
GenomeReviewsGene locus Rmet_1053 in contig CP000352_GR.
KEGGrme:Rmet_1053.
PATRIC20286682. VBIRalMet4734_1449.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2877.
HOGENOMHBG575990.
OMAVFMACER.
PhylomeDBQ1LPI7.
ProtClustDBPRK05198.

Enzyme and pathway databases

BioCycRMET266264:RMET_1053-MONOMER.

Family and domain databases

HAMAPMF_00056. KDO8P_synth.
[Tree]
InterProIPR013785. Aldolase_TIM.
IPR006218. DAHP1/KDSA.
IPR006269. KDO8P_synthase.
[Graphical view]
Gene3DG3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KOK01627.
PANTHERPTHR21057:SF2. KDO8P_synthase. 1 hit.
PfamPF00793. DAHP_synth_1. 1 hit.
[Graphical view]
TIGRFAMsTIGR01362. KDO8P_synth. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ1LPI7_RALME
AccessionPrimary (citable) accession number: Q1LPI7
Entry history
Integrated into UniProtKB/TrEMBL: May 30, 2006
Last sequence update: May 30, 2006
Last modified: January 25, 2012
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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