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Q1LMI1 (Q1LMI1_RALME) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 60. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=4.1.1.15 EMBL ABF08645.1
Gene names
Name:gadB EMBL ABF08645.1
Ordered Locus Names:Rmet_1766 EMBL ABF08645.1
OrganismRalstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) [Complete proteome] [HAMAP] EMBL ABF08645.1
Taxonomic identifier266264 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeCupriavidus

Protein attributes

Sequence length460 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Sequences

Sequence LengthMass (Da)Tools
Q1LMI1 [UniParc].

Last modified May 30, 2006. Version 1.
Checksum: 65F6E8AD4E912697

FASTA46052,338
        10         20         30         40         50         60 
MSDMQEHKVT PYDQFNYEVP ENVFPREGIS ANAAAAIVIS DEWTDTNPML NMSSFVTTFA 

        70         80         90        100        110        120 
EPEAREVAAR NIFKNYIDHD MYPRLFAMEG RMVRWLHELW NGPKGVEPYG TCTVGSSEAC 

       130        140        150        160        170        180 
MLGGLAHKWN WRQRRQAEGK DATRPNMVTG GNVQIVWKKF LRYFDVEPRI VPLKPGNYCL 

       190        200        210        220        230        240 
TAEDLDKYVD ENTICVVAIA GQTFTGEDDD IQGIHDWLDA YEKRTGISIP MHIDGASGGF 

       250        260        270        280        290        300 
VNPFLYPDYK WDFRLPRVQS INASGHKYGL TPPGLGWVVF RERKIFNEEL VFYVNYLGGE 

       310        320        330        340        350        360 
MPTATLNFSR NAFQVAVQYY QFLRLGFDGY KRVMQHTLDN AIFLRQQLVD SGYFDIMNTT 

       370        380        390        400        410        420 
QRIPVVAVTL NKKYKNFNEF DVSNKVREKG WVLSAYTMPP NAESVTSLRV VVRPHVNHNV 

       430        440        450        460 
AQLLANDIIN ACKFLEANGG NAKPPALHKH AEAQSTSLKC 

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References

[1]"Complete sequence of the chromosome of Ralstonia metallidurans CH34."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Martinez M., Goltsman E., Pitluck S., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Kim E., Mergeay M., Benotmane M.A., Vallaeys T., Michaux A., Monchy S., Dunn J., McCorkle S., Taghavi S., van der Lelie D., Richardson P.
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CH34 / ATCC 43123 / DSM 2839.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000352 Genomic DNA. Translation: ABF08645.1.
RefSeqYP_583914.1. NC_007973.1.

3D structure databases

ProteinModelPortalQ1LMI1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING266264.Rmet_1766.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABF08645; ABF08645; Rmet_1766.
GeneID4038568.
KEGGrme:Rmet_1766.
PATRIC20288152. VBIRalMet4734_2178.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0076.
HOGENOMHOG000070228.
OMAMIGRLFN.
OrthoDBEOG6TFCPW.

Enzyme and pathway databases

BioCycCMET266264:GJ5G-1853-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
InterProIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ1LMI1_RALME
AccessionPrimary (citable) accession number: Q1LMI1
Entry history
Integrated into UniProtKB/TrEMBL: May 30, 2006
Last sequence update: May 30, 2006
Last modified: July 9, 2014
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)