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Q1LJ57 (Q1LJ57_RALME) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 52. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Protein translocase subunit SecD HAMAP-Rule MF_01463
Gene names
Name:secD HAMAP-Rule MF_01463 EMBL ABF09819.1
Ordered Locus Names:Rmet_2946 EMBL ABF09819.1
OrganismRalstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) [Complete proteome] [HAMAP] EMBL ABF09819.1
Taxonomic identifier266264 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Cupriavidus ›

Protein attributes

Sequence length636 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA By similarity. HAMAP-Rule MF_01463

Subunit structure

Forms a complex with SecF. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF-YajC and YidC By similarity. HAMAP-Rule MF_01463

Subcellular location

Cell inner membrane; Multi-pass membrane protein By similarity HAMAP-Rule MF_01463.

Sequence similarities

Belongs to the SecD/SecF family. SecD subfamily. HAMAP-Rule MF_01463

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Transmembrane24 – 4421Helical; By similarity HAMAP-Rule MF_01463
Transmembrane467 – 48721Helical; By similarity HAMAP-Rule MF_01463
Transmembrane488 – 50821Helical; By similarity HAMAP-Rule MF_01463
Transmembrane509 – 52921Helical; By similarity HAMAP-Rule MF_01463
Transmembrane554 – 57522Helical; By similarity HAMAP-Rule MF_01463
Transmembrane589 – 60921Helical; By similarity HAMAP-Rule MF_01463

Sequences

Sequence LengthMass (Da)Tools
Q1LJ57 [UniParc].

Last modified May 30, 2006. Version 1.
Checksum: 1A06E00CCBF448E2

FASTA63668,777
        10         20         30         40         50         60 
MRAIIDHANR NDWPTMNRYP IWKYIVILVA LAIGITYTMP NFFGEAPAVQ VSSAKATVKV 

        70         80         90        100        110        120 
DLSMQKHVEE ILAQNQLQPD GVFFDVSGQS GSVKARFRTT DEQLKAKDVL SRSLNPDAND 

       130        140        150        160        170        180 
ATYVVALNLL SGSPRWLTAL HALPMYLGLD LRGGVHFLLQ VDMKGAVDKK LDSLAGDART 

       190        200        210        220        230        240 
LLRDKNIRHG GIDRDGERLT VRFSNGDDAE RARGILADNL RELAFTMDGT NIVGTFTEAA 

       250        260        270        280        290        300 
RKTVQDGAVK QNITTLHNRV NELGVAEPVI QQQGSDRIVV QLPGVQDTAK AKDIIGRTAT 

       310        320        330        340        350        360 
LEARLADPDV RNPRPGDPVP FGDELFTQGN SAPVLLRKQV IFTGDRIESA SAGFDQNQRP 

       370        380        390        400        410        420 
SVNIKLDAQG GRMLRDVSRE NIGKPMGIVL FEKGKGEVLT VATIQSELGS SFQITGSYST 

       430        440        450        460        470        480 
EAANDLALLL RAGSLAAPME IIEERTIGPS LGADNIQKGF DSVAYGFAAI AVFMVLYYML 

       490        500        510        520        530        540 
FGVFSVIALG VNLLLLVAVL SMLQATLTLP GIAAIALVLG MAIDANVLIN ERIREELRAG 

       550        560        570        580        590        600 
ASPQMSIAIG FERAWATILD SNVTTLIAGL ALLAFGSGPV RGFAVVHCLG ILTSMFSAVF 

       610        620        630 
FNRGLVNLWY GRKKKLQGLA IGQIWKPDTT DTPVAK

« Hide

References

[1]"Complete sequence of the chromosome of Ralstonia metallidurans CH34."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Martinez M., Goltsman E., Pitluck S., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Kim E., Mergeay M., Benotmane M.A., Vallaeys T., Michaux A., Monchy S., Dunn J., McCorkle S., Taghavi S., van der Lelie D., Richardson P.
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CH34 / ATCC 43123 / DSM 2839.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000352 Genomic DNA. Translation: ABF09819.1.
RefSeqYP_585088.3. NC_007973.1.

3D structure databases

ProteinModelPortalQ1LJ57.
ModBaseSearch...

Protein-protein interaction databases

STRING266264.Rmet_2946.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABF09819; ABF09819; Rmet_2946.
GeneID4039774.
KEGGrme:Rmet_2946.
PATRIC20290527. VBIRalMet4734_3339.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0342.
HOGENOMHOG000018637.
KOK03072.
OMAVNLWYGR.
ProtClustDBPRK05812.

Enzyme and pathway databases

BioCycCMET266264:GJ5G-3145-MONOMER.

Family and domain databases

HAMAPMF_01463_B. SecD_B.
InterProIPR005791. SecD.
IPR027398. SecD-TM.
IPR022813. SecD/SecF_arch_bac.
IPR022645. SecD/SecF_bac.
IPR022646. SecD/SecF_CS.
[Graphical view]
PfamPF07549. Sec_GG. 1 hit.
PF13721. SecD-TM1. 1 hit.
PF02355. SecD_SecF. 1 hit.
[Graphical view]
TIGRFAMsTIGR00916. 2A0604s01. 1 hit.
TIGR01129. secD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ1LJ57_RALME
AccessionPrimary (citable) accession number: Q1LJ57
Entry history
Integrated into UniProtKB/TrEMBL: May 30, 2006
Last sequence update: May 30, 2006
Last modified: May 29, 2013
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info