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Q1LB84 (Q1LB84_RALME) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
2-dehydro-3-deoxyphosphooctonate aldolase 2 HAMAP MF_00056
EC=2.5.1.55 HAMAP MF_00056
Alternative name(s):
3-deoxy-D-manno-octulosonic acid 8-phosphate synthase 2 HAMAP MF_00056
KDO-8-phosphate synthase 2 HAMAP MF_00056
Phospho-2-dehydro-3-deoxyoctonate aldolase 2 HAMAP MF_00056
Gene names
Name:kdsA EMBL ABF12592.1
Synonyms:kdsA2 HAMAP MF_00056
Ordered Locus Names:Rmet_5733
Encoded onPlasmid megaplasmid CH34
OrganismRalstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) [Complete proteome] [HAMAP]
Taxonomic identifier266264 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Cupriavidus

Protein attributes

Sequence length279 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Phosphoenolpyruvate + D-arabinose 5-phosphate + H2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate. HAMAP MF_00056 SAAS SAAS006269

Pathway

Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis. HAMAP MF_00056 SAAS SAAS006269

Carbohydrate biosynthesis; 3-deoxy-D-manno-octulosonate biosynthesis; 3-deoxy-D-manno-octulosonate from D-ribulose 5-phosphate: step 2/3. HAMAP MF_00056 SAAS SAAS006269

Subcellular location

Cytoplasm By similarity HAMAP MF_00056 SAAS SAAS006269.

Sequence similarities

Belongs to the KdsA family. HAMAP MF_00056

Sequences

Sequence LengthMass (Da)Tools
Q1LB84 [UniParc].

Last modified May 30, 2006. Version 1.
Checksum: C37AA3BE7621CC73

FASTA27930,301
        10         20         30         40         50         60 
MATIKNLSVP NDASLVLFGG INVLESRDLA MQACAAYVEI TTRLGIPYVF KASFDKANRS 

        70         80         90        100        110        120 
SIHSYRGPGL EEGLRILQDV KAAFDVPVLT DIHEPWQAAP VSEVADVLQL PAFLARQTDL 

       130        140        150        160        170        180 
VVSLARTGRP INIKKPQFMS PTQIQHIVEK FREAGNENLL LCDRGTCFGY DNLVVDMLGF 

       190        200        210        220        230        240 
SVMRRATGDL PIVFDVTHSL QQRDPGNAAS GGRRTQVVEL ARAGVAVGIA GLFLEAHPEP 

       250        260        270 
DRALCDGPSA LPLDQLEPFL TQVKMLDDVV KSLPATELA

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References

[1]"Complete sequence of the megaplasmid of Ralstonia metallidurans CH34."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Martinez M., Goltsman E., Pitluck S., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Kim E., Mergeay M., Benotmane M.A., Vallaeys T., Michaux A., Monchy S., Dunn J., McCorkle S., Taghavi S., van der Lelie D., Richardson P.
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CH34 / ATCC 43123 / DSM 2839.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000353 Genomic DNA. Translation: ABF12592.1.
RefSeqYP_587861.1. NC_007974.2.

3D structure databases

ProteinModelPortalQ1LB84.
SMRQ1LB84. Positions 1-273.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ1LB84.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4042597.
GenomeReviewsGene locus Rmet_5733 in contig CP000353_GR.
KEGGrme:Rmet_5733.
PATRIC20296188. VBIRalMet4734_6136.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2877.
HOGENOMHBG575990.
OMAQLILCDR.
PhylomeDBQ1LB84.
ProtClustDBPRK12457.

Enzyme and pathway databases

BioCycRMET266264:RMET_5733-MONOMER.

Family and domain databases

HAMAPMF_00056. KDO8P_synth.
[Tree]
InterProIPR013785. Aldolase_TIM.
IPR006218. DAHP1/KDSA.
IPR006269. KDO8P_synthase.
[Graphical view]
Gene3DG3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KOK01627.
PANTHERPTHR21057:SF2. KDO8P_synthase. 1 hit.
PfamPF00793. DAHP_synth_1. 1 hit.
[Graphical view]
TIGRFAMsTIGR01362. KDO8P_synth. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ1LB84_RALME
AccessionPrimary (citable) accession number: Q1LB84
Entry history
Integrated into UniProtKB/TrEMBL: May 30, 2006
Last sequence update: May 30, 2006
Last modified: January 25, 2012
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info