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Protein
Submitted name:

Procollagen lysine 2-oxoglutarate 5-dioxygenase 3

Gene

plod3

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. iron ion binding Source: InterPro
  2. L-ascorbic acid binding Source: InterPro
  3. procollagen-lysine 5-dioxygenase activity Source: InterPro

GO - Biological processi

  1. motor neuron axon guidance Source: ZFIN
  2. neural crest cell migration Source: ZFIN
Complete GO annotation...

Keywords - Molecular functioni

DioxygenaseImported, Oxidoreductase

Names & Taxonomyi

Protein namesi
Submitted name:
Procollagen lysine 2-oxoglutarate 5-dioxygenase 3Imported
Submitted name:
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3Imported
Gene namesi
Name:plod3Imported
Synonyms:diwankaImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-021031-4. plod3.

Subcellular locationi

GO - Cellular componenti

  1. collagen trimer Source: UniProtKB-KW
  2. endoplasmic reticulum Source: InterPro
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000080246.

Structurei

3D structure databases

ProteinModelPortaliQ1L618.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

CollagenImported

Phylogenomic databases

eggNOGiNOG311199.
HOGENOMiHOG000231099.
HOVERGENiHBG053618.
KOiK13646.
PhylomeDBiQ1L618.

Family and domain databases

InterProiIPR029044. Nucleotide-diphossugar_trans.
IPR005123. Oxoglu/Fe-dep_dioxygenase.
IPR006620. Pro_4_hyd_alph.
IPR001006. Procol_lys_dOase.
[Graphical view]
PfamiPF03171. 2OG-FeII_Oxy. 1 hit.
[Graphical view]
SMARTiSM00702. P4Hc. 1 hit.
[Graphical view]
SUPFAMiSSF53448. SSF53448. 1 hit.
PROSITEiPS51471. FE2OG_OXY. 1 hit.
PS01325. LYS_HYDROXYLASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1L618-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTPVPVILTV ILAVIQPCRT EPRKPNELLV ITAATEVTDG YLRFMRTIRQ
60 70 80 90 100
FNYTIQVLGL GEQWRGGDVA RTVGGGQKVR WLKTELEKHK DKQNTVIMFV
110 120 130 140 150
DSYDVILASG PVELLRKFSR FSHRVVFSAE GFCWPDQRLA SKYPAVHHGK
160 170 180 190 200
RYLNSGGFIG FAPEIHAIVQ QWKYKDDDDD QLFYTRIYLD KEKRRKFNMT
210 220 230 240 250
LDHRSQIFQN LNGAIEEVVL KFEKSRVRVR NVAYDTLPVV IHGNGPTKLQ
260 270 280 290 300
LNYLGNYVPT AWTYENGCGI CEEDLLDLSH LSDEEMPLVH VAVFIEQPMP
310 320 330 340 350
FLEEFLERLA TLNYPHTRIR LFLHNNVVYH EQHVERFWTR HRSLFTGARI
360 370 380 390 400
VGPEENLKHD QARTMAVEAC KKDVSCDYFF SLDADVALTN PDVLRILIEE
410 420 430 440 450
NKSVIAPMLS RHGKLWSNFW GALSPEGFYS RAEDYIDIVQ SKRVGLWNVP
460 470 480 490 500
YITQVYLIRG ETLRSRLAAV SLYQQEGMDP DMSFCKSVRE QGIFMFVSNR
510 520 530 540 550
DEFGRLVSSA NYNISRLHPD MWQIFDNPVD WREKYIHENY SRIFEDDESV
560 570 580 590 600
VEQPCPDVYW FPAFSERMCD DLVETMEEFG QWSGGGHKDE RLSGGYENVP
610 620 630 640 650
TVDIHMNQIQ FEKEWLKFLK EYIVPVTEKL YPGYYPKAQA VMNFVVRYRP
660 670 680 690 700
DEQPSLRPHH DSSTFTINIA LNSKGVDYEG GGCRFLRYNC KVESPRKGWS
710 720 730
FMHPGRLTHY HEGLPTTQGT RYIMVSFVDP
Length:730
Mass (Da):84,911
Last modified:May 30, 2006 - v1
Checksum:i58082A84FE2ADC47
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC163451 mRNA. Translation: AAI63451.1.
DQ019227 mRNA. Translation: AAY84150.1.
RefSeqiNP_001037808.1. NM_001044343.1.
UniGeneiDr.75149.

Genome annotation databases

GeneIDi556077.
KEGGidre:556077.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC163451 mRNA. Translation: AAI63451.1.
DQ019227 mRNA. Translation: AAY84150.1.
RefSeqiNP_001037808.1. NM_001044343.1.
UniGeneiDr.75149.

3D structure databases

ProteinModelPortaliQ1L618.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000080246.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi556077.
KEGGidre:556077.

Organism-specific databases

CTDi8985.
ZFINiZDB-GENE-021031-4. plod3.

Phylogenomic databases

eggNOGiNOG311199.
HOGENOMiHOG000231099.
HOVERGENiHBG053618.
KOiK13646.
PhylomeDBiQ1L618.

Miscellaneous databases

NextBioi20881304.

Family and domain databases

InterProiIPR029044. Nucleotide-diphossugar_trans.
IPR005123. Oxoglu/Fe-dep_dioxygenase.
IPR006620. Pro_4_hyd_alph.
IPR001006. Procol_lys_dOase.
[Graphical view]
PfamiPF03171. 2OG-FeII_Oxy. 1 hit.
[Graphical view]
SMARTiSM00702. P4Hc. 1 hit.
[Graphical view]
SUPFAMiSSF53448. SSF53448. 1 hit.
PROSITEiPS51471. FE2OG_OXY. 1 hit.
PS01325. LYS_HYDROXYLASE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The myotomal diwanka (lh3) glycosyltransferase and type XVIII collagen are critical for motor growth cone migration."
    Schneider V.A., Granato M.
    Neuron 50:683-695(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  2. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].

Entry informationi

Entry nameiQ1L618_DANRE
AccessioniPrimary (citable) accession number: Q1L618
Entry historyi
Integrated into UniProtKB/TrEMBL: May 30, 2006
Last sequence update: May 30, 2006
Last modified: February 4, 2015
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.