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Q1L618

- Q1L618_DANRE

UniProt

Q1L618 - Q1L618_DANRE

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Protein
Submitted name:

Procollagen lysine 2-oxoglutarate 5-dioxygenase 3

Gene
plod3, diwanka
Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. iron ion binding Source: InterPro
  2. L-ascorbic acid binding Source: InterPro
  3. procollagen-lysine 5-dioxygenase activity Source: InterPro

GO - Biological processi

  1. motor neuron axon guidance Source: ZFIN
  2. neural crest cell migration Source: ZFIN
Complete GO annotation...

Keywords - Molecular functioni

DioxygenaseImported, Oxidoreductase

Names & Taxonomyi

Protein namesi
Submitted name:
Procollagen lysine 2-oxoglutarate 5-dioxygenase 3Imported
Submitted name:
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3Imported
Gene namesi
Name:plod3Imported
Synonyms:diwankaImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-021031-4. plod3.

Subcellular locationi

GO - Cellular componenti

  1. collagen trimer Source: UniProtKB-KW
  2. endoplasmic reticulum Source: InterPro
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000080246.

Family & Domainsi

Keywords - Domaini

CollagenImported

Phylogenomic databases

eggNOGiNOG311199.
HOGENOMiHOG000231099.
HOVERGENiHBG053618.
InParanoidiQ1L618.
KOiK13646.

Family and domain databases

InterProiIPR029044. Nucleotide-diphossugar_trans.
IPR005123. Oxoglu/Fe-dep_dioxygenase.
IPR006620. Pro_4_hyd_alph.
IPR001006. Procol_lys_dOase.
[Graphical view]
PfamiPF03171. 2OG-FeII_Oxy. 1 hit.
[Graphical view]
SMARTiSM00702. P4Hc. 1 hit.
[Graphical view]
SUPFAMiSSF53448. SSF53448. 1 hit.
PROSITEiPS51471. FE2OG_OXY. 1 hit.
PS01325. LYS_HYDROXYLASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1L618-1 [UniParc]FASTAAdd to Basket

« Hide

MTPVPVILTV ILAVIQPCRT EPRKPNELLV ITAATEVTDG YLRFMRTIRQ    50
FNYTIQVLGL GEQWRGGDVA RTVGGGQKVR WLKTELEKHK DKQNTVIMFV 100
DSYDVILASG PVELLRKFSR FSHRVVFSAE GFCWPDQRLA SKYPAVHHGK 150
RYLNSGGFIG FAPEIHAIVQ QWKYKDDDDD QLFYTRIYLD KEKRRKFNMT 200
LDHRSQIFQN LNGAIEEVVL KFEKSRVRVR NVAYDTLPVV IHGNGPTKLQ 250
LNYLGNYVPT AWTYENGCGI CEEDLLDLSH LSDEEMPLVH VAVFIEQPMP 300
FLEEFLERLA TLNYPHTRIR LFLHNNVVYH EQHVERFWTR HRSLFTGARI 350
VGPEENLKHD QARTMAVEAC KKDVSCDYFF SLDADVALTN PDVLRILIEE 400
NKSVIAPMLS RHGKLWSNFW GALSPEGFYS RAEDYIDIVQ SKRVGLWNVP 450
YITQVYLIRG ETLRSRLAAV SLYQQEGMDP DMSFCKSVRE QGIFMFVSNR 500
DEFGRLVSSA NYNISRLHPD MWQIFDNPVD WREKYIHENY SRIFEDDESV 550
VEQPCPDVYW FPAFSERMCD DLVETMEEFG QWSGGGHKDE RLSGGYENVP 600
TVDIHMNQIQ FEKEWLKFLK EYIVPVTEKL YPGYYPKAQA VMNFVVRYRP 650
DEQPSLRPHH DSSTFTINIA LNSKGVDYEG GGCRFLRYNC KVESPRKGWS 700
FMHPGRLTHY HEGLPTTQGT RYIMVSFVDP 730
Length:730
Mass (Da):84,911
Last modified:May 30, 2006 - v1
Checksum:i58082A84FE2ADC47
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC163451 mRNA. Translation: AAI63451.1.
DQ019227 mRNA. Translation: AAY84150.1.
RefSeqiNP_001037808.1. NM_001044343.1.
UniGeneiDr.75149.

Genome annotation databases

GeneIDi556077.
KEGGidre:556077.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC163451 mRNA. Translation: AAI63451.1 .
DQ019227 mRNA. Translation: AAY84150.1 .
RefSeqi NP_001037808.1. NM_001044343.1.
UniGenei Dr.75149.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 7955.ENSDARP00000080246.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 556077.
KEGGi dre:556077.

Organism-specific databases

CTDi 8985.
ZFINi ZDB-GENE-021031-4. plod3.

Phylogenomic databases

eggNOGi NOG311199.
HOGENOMi HOG000231099.
HOVERGENi HBG053618.
InParanoidi Q1L618.
KOi K13646.

Miscellaneous databases

NextBioi 20881304.

Family and domain databases

InterProi IPR029044. Nucleotide-diphossugar_trans.
IPR005123. Oxoglu/Fe-dep_dioxygenase.
IPR006620. Pro_4_hyd_alph.
IPR001006. Procol_lys_dOase.
[Graphical view ]
Pfami PF03171. 2OG-FeII_Oxy. 1 hit.
[Graphical view ]
SMARTi SM00702. P4Hc. 1 hit.
[Graphical view ]
SUPFAMi SSF53448. SSF53448. 1 hit.
PROSITEi PS51471. FE2OG_OXY. 1 hit.
PS01325. LYS_HYDROXYLASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The myotomal diwanka (lh3) glycosyltransferase and type XVIII collagen are critical for motor growth cone migration."
    Schneider V.A., Granato M.
    Neuron 50:683-695(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  2. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].

Entry informationi

Entry nameiQ1L618_DANRE
AccessioniPrimary (citable) accession number: Q1L618
Entry historyi
Integrated into UniProtKB/TrEMBL: May 30, 2006
Last sequence update: May 30, 2006
Last modified: July 9, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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