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Q1L618

- Q1L618_DANRE

UniProt

Q1L618 - Q1L618_DANRE

Protein
Submitted name:

Procollagen lysine 2-oxoglutarate 5-dioxygenase 3

Gene

plod3

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 57 (01 Oct 2014)
      Sequence version 1 (30 May 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. iron ion binding Source: InterPro
    2. L-ascorbic acid binding Source: InterPro
    3. procollagen-lysine 5-dioxygenase activity Source: InterPro

    GO - Biological processi

    1. motor neuron axon guidance Source: ZFIN
    2. neural crest cell migration Source: ZFIN

    Keywords - Molecular functioni

    DioxygenaseImported, Oxidoreductase

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Procollagen lysine 2-oxoglutarate 5-dioxygenase 3Imported
    Submitted name:
    Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3Imported
    Gene namesi
    Name:plod3Imported
    Synonyms:diwankaImported
    OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
    Taxonomic identifieri7955 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

    Organism-specific databases

    ZFINiZDB-GENE-021031-4. plod3.

    Subcellular locationi

    GO - Cellular componenti

    1. collagen trimer Source: UniProtKB-KW
    2. endoplasmic reticulum Source: InterPro

    Interactioni

    Protein-protein interaction databases

    STRINGi7955.ENSDARP00000080246.

    Family & Domainsi

    Keywords - Domaini

    CollagenImported

    Phylogenomic databases

    eggNOGiNOG311199.
    HOGENOMiHOG000231099.
    HOVERGENiHBG053618.
    InParanoidiQ1L618.
    KOiK13646.

    Family and domain databases

    InterProiIPR029044. Nucleotide-diphossugar_trans.
    IPR005123. Oxoglu/Fe-dep_dioxygenase.
    IPR006620. Pro_4_hyd_alph.
    IPR001006. Procol_lys_dOase.
    [Graphical view]
    PfamiPF03171. 2OG-FeII_Oxy. 1 hit.
    [Graphical view]
    SMARTiSM00702. P4Hc. 1 hit.
    [Graphical view]
    SUPFAMiSSF53448. SSF53448. 1 hit.
    PROSITEiPS51471. FE2OG_OXY. 1 hit.
    PS01325. LYS_HYDROXYLASE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q1L618-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTPVPVILTV ILAVIQPCRT EPRKPNELLV ITAATEVTDG YLRFMRTIRQ    50
    FNYTIQVLGL GEQWRGGDVA RTVGGGQKVR WLKTELEKHK DKQNTVIMFV 100
    DSYDVILASG PVELLRKFSR FSHRVVFSAE GFCWPDQRLA SKYPAVHHGK 150
    RYLNSGGFIG FAPEIHAIVQ QWKYKDDDDD QLFYTRIYLD KEKRRKFNMT 200
    LDHRSQIFQN LNGAIEEVVL KFEKSRVRVR NVAYDTLPVV IHGNGPTKLQ 250
    LNYLGNYVPT AWTYENGCGI CEEDLLDLSH LSDEEMPLVH VAVFIEQPMP 300
    FLEEFLERLA TLNYPHTRIR LFLHNNVVYH EQHVERFWTR HRSLFTGARI 350
    VGPEENLKHD QARTMAVEAC KKDVSCDYFF SLDADVALTN PDVLRILIEE 400
    NKSVIAPMLS RHGKLWSNFW GALSPEGFYS RAEDYIDIVQ SKRVGLWNVP 450
    YITQVYLIRG ETLRSRLAAV SLYQQEGMDP DMSFCKSVRE QGIFMFVSNR 500
    DEFGRLVSSA NYNISRLHPD MWQIFDNPVD WREKYIHENY SRIFEDDESV 550
    VEQPCPDVYW FPAFSERMCD DLVETMEEFG QWSGGGHKDE RLSGGYENVP 600
    TVDIHMNQIQ FEKEWLKFLK EYIVPVTEKL YPGYYPKAQA VMNFVVRYRP 650
    DEQPSLRPHH DSSTFTINIA LNSKGVDYEG GGCRFLRYNC KVESPRKGWS 700
    FMHPGRLTHY HEGLPTTQGT RYIMVSFVDP 730
    Length:730
    Mass (Da):84,911
    Last modified:May 30, 2006 - v1
    Checksum:i58082A84FE2ADC47
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC163451 mRNA. Translation: AAI63451.1.
    DQ019227 mRNA. Translation: AAY84150.1.
    RefSeqiNP_001037808.1. NM_001044343.1.
    UniGeneiDr.75149.

    Genome annotation databases

    GeneIDi556077.
    KEGGidre:556077.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC163451 mRNA. Translation: AAI63451.1 .
    DQ019227 mRNA. Translation: AAY84150.1 .
    RefSeqi NP_001037808.1. NM_001044343.1.
    UniGenei Dr.75149.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 7955.ENSDARP00000080246.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 556077.
    KEGGi dre:556077.

    Organism-specific databases

    CTDi 8985.
    ZFINi ZDB-GENE-021031-4. plod3.

    Phylogenomic databases

    eggNOGi NOG311199.
    HOGENOMi HOG000231099.
    HOVERGENi HBG053618.
    InParanoidi Q1L618.
    KOi K13646.

    Miscellaneous databases

    NextBioi 20881304.

    Family and domain databases

    InterProi IPR029044. Nucleotide-diphossugar_trans.
    IPR005123. Oxoglu/Fe-dep_dioxygenase.
    IPR006620. Pro_4_hyd_alph.
    IPR001006. Procol_lys_dOase.
    [Graphical view ]
    Pfami PF03171. 2OG-FeII_Oxy. 1 hit.
    [Graphical view ]
    SMARTi SM00702. P4Hc. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53448. SSF53448. 1 hit.
    PROSITEi PS51471. FE2OG_OXY. 1 hit.
    PS01325. LYS_HYDROXYLASE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The myotomal diwanka (lh3) glycosyltransferase and type XVIII collagen are critical for motor growth cone migration."
      Schneider V.A., Granato M.
      Neuron 50:683-695(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
    2. NIH - Zebrafish Gene Collection (ZGC) project
      Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].

    Entry informationi

    Entry nameiQ1L618_DANRE
    AccessioniPrimary (citable) accession number: Q1L618
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 30, 2006
    Last sequence update: May 30, 2006
    Last modified: October 1, 2014
    This is version 57 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)