Skip Header

Contribute Send feedback
Read comments (?) or add your own

Q1IZJ9 (Q1IZJ9_DEIGD) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 52. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Arginine--tRNA ligase HAMAP MF_00123
EC=6.1.1.19 HAMAP MF_00123
Alternative name(s):
Arginyl-tRNA synthetase HAMAP MF_00123
Gene names
Name:argS HAMAP MF_00123
Ordered Locus Names:Dgeo_1036
OrganismDeinococcus geothermalis (strain DSM 11300) [Complete proteome] [HAMAP]
Taxonomic identifier319795 [NCBI]
Taxonomic lineageBacteria › Deinococcus-Thermus › Deinococci › Deinococcales › Deinococcaceae › Deinococcus

Protein attributes

Sequence length628 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg). HAMAP MF_00123

Subunit structure

Monomer By similarity. HAMAP MF_00123

Subcellular location

Cytoplasm By similarity HAMAP MF_00123.

Sequence similarities

Belongs to the class-I aminoacyl-tRNA synthetase family. HAMAP MF_00123 RuleBase RU003489

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Motif133 – 14311"HIGH" region By similarity HAMAP MF_00123

Sequences

Sequence LengthMass (Da)Tools
Q1IZJ9 [UniParc].

Last modified June 13, 2006. Version 1.
Checksum: C315E154EE063A59

FASTA62868,456
        10         20         30         40         50         60 
MAAGSRHLTA DRSLLESPVM DLKAELKAAV QQAAAELGAP VDVAIQETPA NKPGDYGTPA 

        70         80         90        100        110        120 
AFQMAKALGQ NPAQVAAQLA QKVRLPAGIA RVEAAGPFLN FFVDVGAFVR AVVEEPTRIP 

       130        140        150        160        170        180 
AQSGKVVIEH TSVNPNKELH VGHLRNVVLG DSLARIFRAA GHTVEVQNYI DDTGRQTAES 

       190        200        210        220        230        240 
LFAVKHYGRV WDGVQKYDHW LGEGYVRLNA DPEKETLEPG IREVMHQLEA GELRPEVEKV 

       250        260        270        280        290        300 
VRAHLETCFR LGARYDLLNW ESDVVGSGFL GKAMNILEES RYTSHPTEGK YAGAFVMDVS 

       310        320        330        340        350        360 
EFMPGLEEPN VVLLRSDGTA MYAAKDIGYQ FWKFGLFEGM KFKPFITDPE GHVVWTSAPD 

       370        380        390        400        410        420 
GEPDLERRFG HAQEVINVID SRQDHPQTVV RSALGVAGEP EKQARSIHLS YAFVTLEGQT 

       430        440        450        460        470        480 
ISGRKGIAVS ADEAMDEAER RALAVLAEIN PELAAREDAA EIARRIGIGA IRFAMLKAEP 

       490        500        510        520        530        540 
TRKIDFRWDQ ALALNGDTAP YVQYAAVRAA NILRKAQEAG YATDGSGADW SALPDIDVNL 

       550        560        570        580        590        600 
AKMVARLPEV VAQAVRVHSP HVVAQYALDL ATAFNAWYNA KDKNGKPATN VLQSPAGLRE 

       610        620 
ARLALVARLR KGFEETLDLI GIQVPAAM

« Hide

References

[1]"Complete sequence of chromosome 1 of Deinococcus geothermalis DSM 11300."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Saunders E., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Daly M.J., Fredrickson J.K., Makarova K.S., Gaidamakova E.K., Zhai M., Richardson P.
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000359 Genomic DNA. Translation: ABF45335.1.
RefSeqYP_604504.1. NC_008025.1.

3D structure databases

ProteinModelPortalQ1IZJ9.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ1IZJ9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4057996.
GenomeReviewsGene locus Dgeo_1036 in contig CP000359_GR.
KEGGdge:Dgeo_1036.
NMPDRfig|68909.1.peg.512.
PATRIC21623957. VBIDeiGeo41128_1615.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0018.
HOGENOMHBG695395.
OMAGDEFCAE.
PhylomeDBQ1IZJ9.
ProtClustDBPRK01611.

Family and domain databases

HAMAPMF_00123. Arg_tRNA_synth.
[Tree]
InterProIPR001412. aa-tRNA-synth_I_CS.
IPR001278. Arg-tRNA-synth_Ia.
IPR015945. Arg-tRNA-synth_Ia_core.
IPR005148. Arg-tRNA-synth_N.
IPR008909. DALR_anticod-bd.
IPR014729. Rossmann-like_a/b/a_fold.
IPR009080. tRNAsynth_1a_anticodon-bd.
[Graphical view]
Gene3DG3DSA:3.30.1360.70. Arg-tRNA-synth_Ic_N. 1 hit.
G3DSA:3.40.50.620. Rossmann-like_a/b/a_fold. 1 hit.
KOK01887.
PANTHERPTHR11956. Arg_tRNA-synt_1c. 1 hit.
PfamPF03485. Arg_tRNA_synt_N. 1 hit.
PF05746. DALR_1. 1 hit.
PF00750. tRNA-synt_1d. 2 hits.
[Graphical view]
PRINTSPR01038. TRNASYNTHARG.
SMARTSM01016. Arg_tRNA_synt_N. 1 hit.
SM00836. DALR_1. 1 hit.
[Graphical view]
SUPFAMSSF55190. Arg-tRNA-synth_Ic_N. 1 hit.
SSF47323. tRNAsyn_1a_bind. 1 hit.
PROSITEPS00178. AA_TRNA_LIGASE_I. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ1IZJ9_DEIGD
AccessionPrimary (citable) accession number: Q1IZJ9
Entry history
Integrated into UniProtKB/TrEMBL: June 13, 2006
Last sequence update: June 13, 2006
Last modified: January 25, 2012
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info