Q1IZA1 (SYN_DEIGD) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 49.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Asparagine--tRNA ligase EC=6.1.1.22 Alternative name(s): Asparaginyl-tRNA synthetase Short name=AsnRS | ||||
| Gene names |
| ||||
| Organism | Deinococcus geothermalis (strain DSM 11300) [Complete proteome] [HAMAP] | ||||
| Taxonomic identifier | 319795 [NCBI] | ||||
| Taxonomic lineage | Bacteria › Deinococcus-Thermus › Deinococci › Deinococcales › Deinococcaceae › Deinococcus |
Protein attributes
| Sequence length | 449 AA. |
| Sequence status | Complete. |
| Protein existence | Inferred from homology |
General annotation (Comments)
| Catalytic activity | ATP + L-asparagine + tRNA(Asn) = AMP + diphosphate + L-asparaginyl-tRNA(Asn). HAMAP MF_00534 |
| Subunit structure | Homodimer By similarity. HAMAP MF_00534 |
| Subcellular location | Cytoplasm By similarity HAMAP MF_00534. |
| Sequence similarities | Belongs to the class-II aminoacyl-tRNA synthetase family. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Protein biosynthesis |
| Cellular component | Cytoplasm |
| Ligand | ATP-binding Nucleotide-binding |
| Molecular function | Aminoacyl-tRNA synthetase Ligase |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | asparaginyl-tRNA aminoacylation Inferred from electronic annotation. Source: InterPro |
| Cellular component | cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular function | ATP binding Inferred from electronic annotation. Source: UniProtKB-KW asparagine-tRNA ligase activityInferred from electronic annotation. Source: EC nucleic acid bindingInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||
Molecule processing | |||||||
|---|---|---|---|---|---|---|---|
| Chain | 1 – 449 | 449 | Asparagine--tRNA ligase HAMAP MF_00534 | PRO_1000081847 | |||
Sequences
| ||||||||||||||||||
References
| [1] | "Complete sequence of chromosome 1 of Deinococcus geothermalis DSM 11300." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Saunders E., Gilna P., Schmutz J. Richardson P.Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 11300. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | CP000359 Genomic DNA. Translation: ABF45433.1. |
| RefSeq | YP_604602.1. NC_008025.1. |
3D structure databases | |
| ProteinModelPortal | Q1IZA1. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | Q1IZA1. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| GeneID | 4058304. |
| GenomeReviews | Gene locus Dgeo_1136 in contig CP000359_GR. |
| KEGG | dge:Dgeo_1136. |
| NMPDR | fig|68909.1.peg.2106. |
| PATRIC | 21624157. VBIDeiGeo41128_1715. |
Organism-specific databases | |
| CMR | Search... |
Phylogenomic databases | |
| eggNOG | COG0017. |
| HOGENOM | HBG745843. |
| OMA | DHLPQET. |
| PhylomeDB | Q1IZA1. |
| ProtClustDB | PRK03932. |
Enzyme and pathway databases | |
| BioCyc | DGEO319795:DGEO_1136-MONOMER. |
Family and domain databases | |
| HAMAP | MF_00534. Asn_tRNA_synth. [Tree] |
| InterPro | IPR004364. aa-tRNA-synt_II. IPR018150. aa-tRNA-synt_II-like. IPR006195. aa-tRNA-synth_II. IPR004522. Asn-tRNA-synth_IIb. IPR002312. Asp/Asn-tRNA-synth_IIb. IPR012340. NA-bd_OB-fold. IPR016027. NA-bd_OB-fold-like. IPR004365. NA-bd_OB_tRNA-helicase. [Graphical view] |
| Gene3D | G3DSA:2.40.50.140. OB_NA_bd_sub. 1 hit. |
| KO | K01893. |
| PANTHER | PTHR22594. aa-tRNA-synt_II. 1 hit. PTHR22594:SF6. PTHR22594:SF6. 1 hit. |
| Pfam | PF00152. tRNA-synt_2. 1 hit. PF01336. tRNA_anti. 1 hit. [Graphical view] |
| PRINTS | PR01042. TRNASYNTHASP. |
| SUPFAM | SSF50249. Nucleic_acid_OB. 1 hit. |
| TIGRFAMs | TIGR00457. AsnS. 1 hit. |
| PROSITE | PS50862. AA_TRNA_LIGASE_II. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | SYN_DEIGD | ||||||||
| Accession | Primary (citable) accession number: Q1IZA1 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Prokaryotic Protein Annotation Program | ||||||||
Relevant documents
| Aminoacyl-tRNA synthetases List of aminoacyl-tRNA synthetase entries |
| SIMILARITY comments Index of protein domains and families |

Clusters with