Q1IUF1 (GCP_KORVE) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp

Alternative name(s):
t(6)A37 threonylcarbamoyladenosine biosynthesis protein

Gene names

Name:	gcp
Ordered Locus Names:	Acid345_0494

Organism

Koribacter versatilis (strain Ellin345)

Taxonomic identifier

204669 [NCBI]

Taxonomic lineage

Bacteria › Acidobacteria › Candidatus Koribacter

Protein attributes

Sequence length	381 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t6A37) in tRNAs that read codons beginning with adenine By similarity. HAMAP MF_01445
Subcellular location	Cytoplasm Potential HAMAP MF_01445.
Sequence similarities	Belongs to the KAE1 / YgjD family.

Ontologies

Keywords
Biological process	tRNA processing
Cellular component	Cytoplasm
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	proteolysis Inferred from electronic annotation. Source: InterPro tRNA processing Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	metalloendopeptidase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 381	381	Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp HAMAP MF_01445		PRO_0000303241

Sequences

	Sequence		Length	Mass (Da)
	Q1IUF1 [UniParc]. Last modified June 13, 2006. Version 1. Checksum: 3C62248B62A689C9	FASTA	381	41,207
	10 20 30 40 50 60 MADAVILGIE SSCDETAAAV IRNGAEILSS VVFSQIYTHM RYGGVVPELA SREHLKAIVP 70 80 90 100 110 120 VVRQAVEDAG QSYDKIDAIA VTRGPGLAGA LLVGVSYAKA LSFALDKPLI GVNHLEGHIH 130 140 150 160 170 180 VVLLEQKQQG VGEIQFPVLA LVVSGGHTHL YLAEKKDAGW TYRDVGHTRD DAAGEAYDKV 190 200 210 220 230 240 AKLLGLGYPG GPILDGLAKH GDPRAVRFPF AQIKHRDRNP QNRHEDDDAR VDFSYSGIKT 250 260 270 280 290 300 AVLRYVETHE MKAAIEARRT ALKEIEKPSQ DDYLRVCDRQ TLDLIASFQR AVVNDLVSKA 310 320 330 340 350 360 LHAAAENNAA TLLVTGGVAA NSELRETFER RAGELGLPVY FPSRPLSTDN AAMIAAAAYP 370 380 RFLSGEFAAP DLSAEANLRL R

References

[1]

"Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils." Ward N.L., Challacombe J.F., Janssen P.H., Henrissat B., Coutinho P.M., Wu M., Xie G., Haft D.H., Sait M., Badger J., Barabote R.D., Bradley B., Brettin T.S., Brinkac L.M., Bruce D., Creasy T., Daugherty S.C., Davidsen T.M. , DeBoy R.T., Detter J.C., Dodson R.J., Durkin A.S., Ganapathy A., Gwinn-Giglio M., Han C.S., Khouri H., Kiss H., Kothari S.P., Madupu R., Nelson K.E., Nelson W.C., Paulsen I., Penn K., Ren Q., Rosovitz M.J., Selengut J.D., Shrivastava S., Sullivan S.A., Tapia R., Thompson L.S., Watkins K.L., Yang Q., Yu C., Zafar N., Zhou L., Kuske C.R. Appl. Environ. Microbiol. 75:2046-2056(2009) [PubMed: 19201974] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Ellin345.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000360 Genomic DNA. Translation: ABF39499.1.
RefSeq	YP_589573.1. NC_008009.1.
3D structure databases
ProteinModelPortal	Q1IUF1.
ModBase	Search...
Protein-protein interaction databases
STRING	Q1IUF1.
Protein family/group databases
MEROPS	M22.001.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4068619.
GenomeReviews	Gene locus Acid345_0494 in contig CP000360_GR.
KEGG	aba:Acid345_0494.
NMPDR	fig|204669.6.peg.485.
PATRIC	31977742. VBICanKor57425_0524.
Phylogenomic databases
eggNOG	COG0533.
HOGENOM	HBG304663.
OMA	MEVIGQT.
ProtClustDB	PRK09604.
Enzyme and pathway databases
BioCyc	ABAC204669:ACID345_0494-MONOMER.
Family and domain databases
HAMAP	MF_01445. gcp. [Tree]
InterPro	IPR022450. Pept_M22_O-sialoglycopept. IPR000905. Peptidase_M22. IPR017860. Peptidase_M22_CS. IPR017861. Peptidase_M22_subgr. [Graphical view]
KO	K01409.
Pfam	PF00814. Peptidase_M22. 1 hit. [Graphical view]
PRINTS	PR00789. OSIALOPTASE.
TIGRFAMs	TIGR03723. Bact_gcp. 1 hit. TIGR00329. Gcp_kae1. 1 hit.
PROSITE	PS01016. GLYCOPROTEASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

GCP_KORVE

Accession

Primary (citable) accession number: Q1IUF1

Entry history

Integrated into UniProtKB/Swiss-Prot:	September 11, 2007
Last sequence update:	June 13, 2006
Last modified:	January 25, 2012
This is version 41 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program