Q1IU96 (Q1IU96_KORVE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Lytic transglycosylase, catalytic EMBL ABF39554.1

Gene names

Ordered Locus Names:

Acid345_0549

Organism

Koribacter versatilis (strain Ellin345)

Taxonomic identifier

204669 [NCBI]

Taxonomic lineage

Bacteria › Acidobacteria › Candidatus Koribacter

Protein attributes

Sequence length	638 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ABF39554.1
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	cell wall macromolecule catabolic process Inferred from electronic annotation. Source: InterPro peptidoglycan metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	membrane Inferred from electronic annotation. Source: InterPro
Molecular function	lytic transglycosylase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 21	21	Potential EMBL ABF39554.1
	Chain	22 – 638	617	Potential EMBL ABF39554.1		PRO_5000120935

Sequences

	Sequence		Length	Mass (Da)
	Q1IU96 [UniParc]. Last modified June 13, 2006. Version 1. Checksum: AA7673D2CA9A83CE	FASTA	638	70,140
	10 20 30 40 50 60 MRIRSFWSLC LLGAMIITTA CETDNPKKAA TTPPPQATAP TLATPQSDAA PATAPVATAA 70 80 90 100 110 120 PAGDSVTELI AKAEKEFKAG QSNYAAGHLE AAKDNFDQAF KTMLSSNLDV HSDERLENEF 130 140 150 160 170 180 DKIVESVHEL ELQALKEGDG FTEQKSEPAP IDEANEVTFP VDPNIKAQAL AEIRQTRSDL 190 200 210 220 230 240 PLVMNDQIAG YISYFSSRAK GTLANGMARS GMYREMIQRV LKEEGVPQDL IYLAQAESGF 250 260 270 280 290 300 RPLALSRAGA RGMWQFMASR GGQYGLDRNW WVDDRQDPEK ATRAAARHLK DLYHMFGDWY 310 320 330 340 350 360 LAMAAYNSGP LTVQRAVQRT GYADFWELYK RGVLPGETKN YVPIIIAITI MSKNPAQYGL 370 380 390 400 410 420 TEVQFDAAIQ GDSVTIDYPV DLRLVAECVD GSVSTLQELN PSLLRMTTPK DQSFTLHVPT 430 440 450 460 470 480 GTKDKFEQNI AAIPLEKRVL WRFHRVQPGD TLASIAHKYH VSSDAIAEAN DLPDEEVRTD 490 500 510 520 530 540 AKLIIPVASS KGSQSASNEG GGYSKKPVSY KVRKGDTIAS IADDFGVPAD KIRRWNHISG 550 560 570 580 590 600 DSVKQGRVLH IYKPTGDEEE ASSTRSRSSS KKAAPELSSK SQAKSSDEKK QSAMHHTVKR 610 620 630 GETLSSIANQ YNTTVAELKK YNPNTSKLRP GDVLVIRR

References

[1]

"Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils." Ward N.L., Challacombe J.F., Janssen P.H., Henrissat B., Coutinho P.M., Wu M., Xie G., Haft D.H., Sait M., Badger J., Barabote R.D., Bradley B., Brettin T.S., Brinkac L.M., Bruce D., Creasy T., Daugherty S.C., Davidsen T.M. , DeBoy R.T., Detter J.C., Dodson R.J., Durkin A.S., Ganapathy A., Gwinn-Giglio M., Han C.S., Khouri H., Kiss H., Kothari S.P., Madupu R., Nelson K.E., Nelson W.C., Paulsen I., Penn K., Ren Q., Rosovitz M.J., Selengut J.D., Shrivastava S., Sullivan S.A., Tapia R., Thompson L.S., Watkins K.L., Yang Q., Yu C., Zafar N., Zhou L., Kuske C.R. Appl. Environ. Microbiol. 75:2046-2056(2009) [PubMed: 19201974] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Ellin345.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000360 Genomic DNA. Translation: ABF39554.1.
RefSeq	YP_589628.1. NC_008009.1.
3D structure databases
ProteinModelPortal	Q1IU96.
ModBase	Search...
Protein-protein interaction databases
STRING	Q1IU96.
Protein family/group databases
CAZy	CBM50. Carbohydrate-Binding Module Family 50. GH23. Glycoside Hydrolase Family 23.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4070007.
GenomeReviews	Gene locus Acid345_0549 in contig CP000360_GR.
KEGG	aba:Acid345_0549.
NMPDR	fig|204669.6.peg.539.
PATRIC	31977864. VBICanKor57425_0584.
Phylogenomic databases
eggNOG	COG0741.
HOGENOM	HBG293284.
OMA	YNEHNIR.
PhylomeDB	Q1IU96.
ProtClustDB	CLSK774314.
Family and domain databases
InterPro	IPR023346. Lysozyme-like_dom. IPR008258. Lytic_TGlycosylase-like_cat. IPR018392. Peptidoglycan-bd_lysin. IPR002482. Peptidoglycan-bd_Lysin_subgr. IPR000189. Transglyc_AS. [Graphical view]
KO	K08307.
Pfam	PF01476. LysM. 3 hits. PF01464. SLT. 1 hit. [Graphical view]
SMART	SM00257. LysM. 3 hits. [Graphical view]
SUPFAM	SSF53955. SSF53955. 1 hit.
PROSITE	PS00922. TRANSGLYCOSYLASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q1IU96_KORVE

Accession

Primary (citable) accession number: Q1IU96

Entry history

Integrated into UniProtKB/TrEMBL:	June 13, 2006
Last sequence update:	June 13, 2006
Last modified:	December 14, 2011
This is version 36 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)