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Q1ITL6

- Q1ITL6_KORVE

UniProt

Q1ITL6 - Q1ITL6_KORVE

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Protein
Submitted name: ATP dependent DNA ligase
Gene
Acid345_0779
Organism
Koribacter versatilis (strain Ellin345)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciKVER204669:GHL8-786-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Acid345_0779Imported
OrganismiKoribacter versatilis (strain Ellin345)Imported
Taxonomic identifieri204669 [NCBI]
Taxonomic lineageiBacteriaAcidobacteriaCandidatus Koribacter
ProteomesiUP000002432: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi204669.Acid345_0779.

Structurei

3D structure databases

ProteinModelPortaliQ1ITL6.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222509.
KOiK01971.
OMAiMVHRMDP.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1ITL6-1 [UniParc]FASTAAdd to Basket

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MALEEYKKKR RFTDTPEPPP SIDKSKGHRF VVQKHHASRL HYDFRLEMDG    50
VLKSWAVPKG PSLDPADKRL AMAVEDHPVS YLKFEGIIPE NNYGAGTVMV 100
WDIGTWEPVG DADAMLAKGD LKFRLKGKKL NGEFALVHIK SRRSGTKGNE 150
WLLIKHRDDA VVPGYDIDEY DFSALTKRSL DDIAGDQKSA EWQSNRAGSS 200
NIPQKSAWLA DAIKKADKKA AAKKTAVKTK APAKKSAKTA AKKAVKTTAT 250
KKQKDAHPAF ADLKGARHAA MPSQIQPMLA TLVDEPFEDS QWLYEIKWDG 300
YRAVTFLNDG KLRFVSRNGN DLTNAYPELH DIGGSISAQR AILDGEIVAL 350
DGEGRSSFSL MQQRTGIGEG GRRTGKGNAN IPVQYYAFDL LYLDGYDLTH 400
VSLEDRKRVL SEIISPSDVL RVSDSFDEGL PLYEAARARG LEGIIAKRRE 450
SCYLTKRSRE WLKIKITQRQ ECVIGGYTEP KGSRENFGSV VLGLYDDKGR 500
LIPVGQAGSG FTAQSNAALW KKLQKLETKT SPFFGKPDSP RQVHYVRPEL 550
VAEIKFTEWT HQGQSGQVRM RAPVFEGLRT DKSPSECVFD FAKPTKLEVK 600
KAESGDAA 608
Length:608
Mass (Da):67,631
Last modified:June 13, 2006 - v1
Checksum:i698C938655ECC5ED
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000360 Genomic DNA. Translation: ABF39784.1.
RefSeqiYP_589858.1. NC_008009.1.

Genome annotation databases

EnsemblBacteriaiABF39784; ABF39784; Acid345_0779.
GeneIDi4069524.
KEGGiaba:Acid345_0779.
PATRICi31978374. VBICanKor57425_0838.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000360 Genomic DNA. Translation: ABF39784.1 .
RefSeqi YP_589858.1. NC_008009.1.

3D structure databases

ProteinModelPortali Q1ITL6.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 204669.Acid345_0779.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABF39784 ; ABF39784 ; Acid345_0779 .
GeneIDi 4069524.
KEGGi aba:Acid345_0779.
PATRICi 31978374. VBICanKor57425_0838.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000222509.
KOi K01971.
OMAi MVHRMDP.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci KVER204669:GHL8-786-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Ellin345Imported.

Entry informationi

Entry nameiQ1ITL6_KORVE
AccessioniPrimary (citable) accession number: Q1ITL6
Entry historyi
Integrated into UniProtKB/TrEMBL: June 13, 2006
Last sequence update: June 13, 2006
Last modified: May 14, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3