Q1ITL6 (Q1ITL6_KORVE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ABF39784.1

Gene names

Ordered Locus Names:

Acid345_0779

Organism

Koribacter versatilis (strain Ellin345) [Reference proteome] [HAMAP]

Taxonomic identifier

204669 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Fibrobacteres/Acidobacteria group › Acidobacteria › unclassified Acidobacteria › Candidatus Koribacter › Candidatus Koribacter versatilis

Protein attributes

Sequence length	608 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABF39784.1
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q1ITL6 [UniParc]. Last modified June 13, 2006. Version 1. Checksum: 698C938655ECC5ED	FASTA	608	67,631
	10 20 30 40 50 60 MALEEYKKKR RFTDTPEPPP SIDKSKGHRF VVQKHHASRL HYDFRLEMDG VLKSWAVPKG 70 80 90 100 110 120 PSLDPADKRL AMAVEDHPVS YLKFEGIIPE NNYGAGTVMV WDIGTWEPVG DADAMLAKGD 130 140 150 160 170 180 LKFRLKGKKL NGEFALVHIK SRRSGTKGNE WLLIKHRDDA VVPGYDIDEY DFSALTKRSL 190 200 210 220 230 240 DDIAGDQKSA EWQSNRAGSS NIPQKSAWLA DAIKKADKKA AAKKTAVKTK APAKKSAKTA 250 260 270 280 290 300 AKKAVKTTAT KKQKDAHPAF ADLKGARHAA MPSQIQPMLA TLVDEPFEDS QWLYEIKWDG 310 320 330 340 350 360 YRAVTFLNDG KLRFVSRNGN DLTNAYPELH DIGGSISAQR AILDGEIVAL DGEGRSSFSL 370 380 390 400 410 420 MQQRTGIGEG GRRTGKGNAN IPVQYYAFDL LYLDGYDLTH VSLEDRKRVL SEIISPSDVL 430 440 450 460 470 480 RVSDSFDEGL PLYEAARARG LEGIIAKRRE SCYLTKRSRE WLKIKITQRQ ECVIGGYTEP 490 500 510 520 530 540 KGSRENFGSV VLGLYDDKGR LIPVGQAGSG FTAQSNAALW KKLQKLETKT SPFFGKPDSP 550 560 570 580 590 600 RQVHYVRPEL VAEIKFTEWT HQGQSGQVRM RAPVFEGLRT DKSPSECVFD FAKPTKLEVK KAESGDAA

References

[1]

"Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils." Ward N.L., Challacombe J.F., Janssen P.H., Henrissat B., Coutinho P.M., Wu M., Xie G., Haft D.H., Sait M., Badger J., Barabote R.D., Bradley B., Brettin T.S., Brinkac L.M., Bruce D., Creasy T., Daugherty S.C., Davidsen T.M. , DeBoy R.T., Detter J.C., Dodson R.J., Durkin A.S., Ganapathy A., Gwinn-Giglio M., Han C.S., Khouri H., Kiss H., Kothari S.P., Madupu R., Nelson K.E., Nelson W.C., Paulsen I., Penn K., Ren Q., Rosovitz M.J., Selengut J.D., Shrivastava S., Sullivan S.A., Tapia R., Thompson L.S., Watkins K.L., Yang Q., Yu C., Zafar N., Zhou L., Kuske C.R. Appl. Environ. Microbiol. 75:2046-2056(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Ellin345.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000360 Genomic DNA. Translation: ABF39784.1.
RefSeq	YP_589858.1. NC_008009.1.
3D structure databases
ProteinModelPortal	Q1ITL6.
ModBase	Search...
Protein-protein interaction databases
STRING	204669.Acid345_0779.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABF39784; ABF39784; Acid345_0779.
GeneID	4069524.
KEGG	aba:Acid345_0779.
PATRIC	31978374. VBICanKor57425_0838.
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000222509.
KO	K01971.
OMA	FKFRLAG.
ProtClustDB	CLSK846518.
Enzyme and pathway databases
BioCyc	KVER204669:GHL8-834-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR014144. LigD_PE_domain. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q1ITL6_KORVE

Accession

Primary (citable) accession number: Q1ITL6

Entry history

Integrated into UniProtKB/TrEMBL:	June 13, 2006
Last sequence update:	June 13, 2006
Last modified:	May 1, 2013
This is version 43 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)