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Q1ITL6

- Q1ITL6_KORVE

UniProt

Q1ITL6 - Q1ITL6_KORVE

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Acid345_0779

Organism
Koribacter versatilis (strain Ellin345)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 50 (01 Oct 2014)
      Sequence version 1 (13 Jun 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciKVER204669:GHL8-786-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Acid345_0779Imported
    OrganismiKoribacter versatilis (strain Ellin345)Imported
    Taxonomic identifieri204669 [NCBI]
    Taxonomic lineageiBacteriaAcidobacteriaCandidatus Koribacter
    ProteomesiUP000002432: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi204669.Acid345_0779.

    Structurei

    3D structure databases

    ProteinModelPortaliQ1ITL6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiMVHRMDP.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q1ITL6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MALEEYKKKR RFTDTPEPPP SIDKSKGHRF VVQKHHASRL HYDFRLEMDG    50
    VLKSWAVPKG PSLDPADKRL AMAVEDHPVS YLKFEGIIPE NNYGAGTVMV 100
    WDIGTWEPVG DADAMLAKGD LKFRLKGKKL NGEFALVHIK SRRSGTKGNE 150
    WLLIKHRDDA VVPGYDIDEY DFSALTKRSL DDIAGDQKSA EWQSNRAGSS 200
    NIPQKSAWLA DAIKKADKKA AAKKTAVKTK APAKKSAKTA AKKAVKTTAT 250
    KKQKDAHPAF ADLKGARHAA MPSQIQPMLA TLVDEPFEDS QWLYEIKWDG 300
    YRAVTFLNDG KLRFVSRNGN DLTNAYPELH DIGGSISAQR AILDGEIVAL 350
    DGEGRSSFSL MQQRTGIGEG GRRTGKGNAN IPVQYYAFDL LYLDGYDLTH 400
    VSLEDRKRVL SEIISPSDVL RVSDSFDEGL PLYEAARARG LEGIIAKRRE 450
    SCYLTKRSRE WLKIKITQRQ ECVIGGYTEP KGSRENFGSV VLGLYDDKGR 500
    LIPVGQAGSG FTAQSNAALW KKLQKLETKT SPFFGKPDSP RQVHYVRPEL 550
    VAEIKFTEWT HQGQSGQVRM RAPVFEGLRT DKSPSECVFD FAKPTKLEVK 600
    KAESGDAA 608
    Length:608
    Mass (Da):67,631
    Last modified:June 13, 2006 - v1
    Checksum:i698C938655ECC5ED
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000360 Genomic DNA. Translation: ABF39784.1.
    RefSeqiYP_589858.1. NC_008009.1.

    Genome annotation databases

    EnsemblBacteriaiABF39784; ABF39784; Acid345_0779.
    GeneIDi4069524.
    KEGGiaba:Acid345_0779.
    PATRICi31978374. VBICanKor57425_0838.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000360 Genomic DNA. Translation: ABF39784.1 .
    RefSeqi YP_589858.1. NC_008009.1.

    3D structure databases

    ProteinModelPortali Q1ITL6.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 204669.Acid345_0779.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABF39784 ; ABF39784 ; Acid345_0779 .
    GeneIDi 4069524.
    KEGGi aba:Acid345_0779.
    PATRICi 31978374. VBICanKor57425_0838.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi MVHRMDP.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci KVER204669:GHL8-786-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Ellin345Imported.

    Entry informationi

    Entry nameiQ1ITL6_KORVE
    AccessioniPrimary (citable) accession number: Q1ITL6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 13, 2006
    Last sequence update: June 13, 2006
    Last modified: October 1, 2014
    This is version 50 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3