Q1IQ89 (Q1IQ89_KORVE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Diguanylate cyclase with PAS/PAC sensor EMBL ABF40961.1

Gene names

Ordered Locus Names:

Acid345_1960

Organism

Koribacter versatilis (strain Ellin345)

Taxonomic identifier

204669 [NCBI]

Taxonomic lineage

Bacteria › Acidobacteria › Candidatus Koribacter

Protein attributes

Sequence length	318 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	cyclic nucleotide biosynthetic process Inferred from electronic annotation. Source: InterPro intracellular signal transduction Inferred from electronic annotation. Source: InterPro regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular function	phosphorus-oxygen lyase activity Inferred from electronic annotation. Source: InterPro signal transducer activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q1IQ89 [UniParc]. Last modified June 13, 2006. Version 1. Checksum: 2CBF1A879E079A7C	FASTA	318	35,801
	10 20 30 40 50 60 MADGSIPSTL TELGKIDAFV NSPTFFQRLL EELYEGVYFV DTHRRILYWN RAAHRISGYS 70 80 90 100 110 120 AEEVIGHYCQ DNILNHVDDA GTQLCFGKCP LLTTIEHGVP HECEIYLHHK NGHRVPVRVH 130 140 150 160 170 180 VTPVRDANNQ IIGAVEMFVE ANSSKARNQR AELLHSRGFL DPLTDIGNRR YLEIELFKAL 190 200 210 220 230 240 QEFRQHGLPF GAILADIDHL RIVNEHYGHT VGDQVLRAVS LTLANAVSEA DILGRWSVDE 250 260 270 280 290 300 FLILVPSSSV DSLGDIAERC RALVERANIQ VGTEQLVATI SAGASAVDPL DTMEMFIRRL 310 ENYLQRSKYS GRNRITMK

References

[1]

"Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils." Ward N.L., Challacombe J.F., Janssen P.H., Henrissat B., Coutinho P.M., Wu M., Xie G., Haft D.H., Sait M., Badger J., Barabote R.D., Bradley B., Brettin T.S., Brinkac L.M., Bruce D., Creasy T., Daugherty S.C., Davidsen T.M. , DeBoy R.T., Detter J.C., Dodson R.J., Durkin A.S., Ganapathy A., Gwinn-Giglio M., Han C.S., Khouri H., Kiss H., Kothari S.P., Madupu R., Nelson K.E., Nelson W.C., Paulsen I., Penn K., Ren Q., Rosovitz M.J., Selengut J.D., Shrivastava S., Sullivan S.A., Tapia R., Thompson L.S., Watkins K.L., Yang Q., Yu C., Zafar N., Zhou L., Kuske C.R. Appl. Environ. Microbiol. 75:2046-2056(2009) [PubMed: 19201974] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Ellin345.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000360 Genomic DNA. Translation: ABF40961.1.
RefSeq	YP_591035.1. NC_008009.1.
3D structure databases
ProteinModelPortal	Q1IQ89.
ModBase	Search...
Protein-protein interaction databases
STRING	Q1IQ89.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4073220.
GenomeReviews	Gene locus Acid345_1960 in contig CP000360_GR.
KEGG	aba:Acid345_1960.
NMPDR	fig|204669.6.peg.1948.
PATRIC	31980892. VBICanKor57425_2087.
Phylogenomic databases
eggNOG	COG2199.
HOGENOM	HBG638920.
OMA	ESTRAIP.
Family and domain databases
InterPro	IPR001054. A/G_cyclase. IPR000160. Diguanylate_cyclase-pred. IPR001610. PAC. IPR000014. PAS. IPR013656. PAS_4. [Graphical view]
Pfam	PF00990. GGDEF. 1 hit. PF08448. PAS_4. 1 hit. [Graphical view]
SMART	SM00267. GGDEF. 1 hit. SM00086. PAC. 1 hit. SM00091. PAS. 1 hit. [Graphical view]
SUPFAM	SSF55073. A/G_cyclase. 1 hit.
TIGRFAMs	TIGR00254. GGDEF. 1 hit. TIGR00229. Sensory_box. 1 hit.
PROSITE	PS50887. GGDEF. 1 hit. PS50112. PAS. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q1IQ89_KORVE

Accession

Primary (citable) accession number: Q1IQ89

Entry history

Integrated into UniProtKB/TrEMBL:	June 13, 2006
Last sequence update:	June 13, 2006
Last modified:	December 14, 2011
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)