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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Acid345_3429

Organism
Koribacter versatilis (strain Ellin345)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciKVER204669:GHL8-3456-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Acid345_3429Imported
OrganismiKoribacter versatilis (strain Ellin345)Imported
Taxonomic identifieri204669 [NCBI]
Taxonomic lineageiBacteriaAcidobacteriaAcidobacterialesAcidobacteriaceaeCandidatus Koribacter
ProteomesiUP000002432: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi204669.Acid345_3429.

Structurei

3D structure databases

ProteinModelPortaliQ1IL20.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222508.
KOiK01971.
OMAiHERTADC.
OrthoDBiEOG63NMFT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1IL20-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPRRSAVKKS PKLSDGAVSA EDLKQQFQKL KLPIQPPFPP MEAKLVDAIP
60 70 80 90 100
EGALWQYEPK WDGFRCVAFR DGDTVELQSK AGQPLGRYFP EIVEALLKLK
110 120 130 140 150
PTEFVLDGEI VILRNGHLSF DDLLMRIHPA ASRIKKLSVE TPATYLVFDL
160 170 180 190 200
LVDDKAHSLV EETQAARRER LELFFKTFKG NASVRLSPMT RDHAEAEKWM
210 220 230 240 250
KKLAVIGFDG VVAKALDQPY QSGERAMRKI KRIRTADCVV GGFRYASKGG
260 270 280 290 300
EVGSLLLGVY NDEGQLDHIG FSSSFAREER KQLKKILKPY MNGEGFTGKA
310 320 330 340 350
PGGPSRWSTE RTGEWERLDP KLVCEVSYDH FSGGRFRHGT KFLRWRPEKE
360 370
PKSCTYEQIT PAKQRGSMDQ FLAA
Length:374
Mass (Da):42,263
Last modified:June 13, 2006 - v1
Checksum:i2881139B2162B0C5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000360 Genomic DNA. Translation: ABF42430.1.
RefSeqiYP_592504.1. NC_008009.1.

Genome annotation databases

EnsemblBacteriaiABF42430; ABF42430; Acid345_3429.
GeneIDi4070313.
KEGGiaba:Acid345_3429.
PATRICi31984050. VBICanKor57425_3656.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000360 Genomic DNA. Translation: ABF42430.1.
RefSeqiYP_592504.1. NC_008009.1.

3D structure databases

ProteinModelPortaliQ1IL20.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi204669.Acid345_3429.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABF42430; ABF42430; Acid345_3429.
GeneIDi4070313.
KEGGiaba:Acid345_3429.
PATRICi31984050. VBICanKor57425_3656.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222508.
KOiK01971.
OMAiHERTADC.
OrthoDBiEOG63NMFT.

Enzyme and pathway databases

BioCyciKVER204669:GHL8-3456-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Ellin345Imported.

Entry informationi

Entry nameiQ1IL20_KORVE
AccessioniPrimary (citable) accession number: Q1IL20
Entry historyi
Integrated into UniProtKB/TrEMBL: June 13, 2006
Last sequence update: June 13, 2006
Last modified: January 7, 2015
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.