Unreviewed, UniProtKB/TrEMBL Q1IKU7 (Q1IKU7_ACIBL)

Names and origin

Protein names

Submitted name:
    Two component transcriptional regulator, LuxR family EMBL ABF42503.1

Gene names

Ordered Locus Names:

Acid345_3502

Organism

Acidobacteria bacterium (strain Ellin345) [Complete proteome] [HAMAP]

Taxonomic identifier

204669 [NCBI]

Taxonomic lineage

Bacteria › Acidobacteria › Acidobacteriales › Acidobacteriaceae

Protein attributes

Sequence length	228 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Predicted.

General annotation (Comments)

Sequence similarities

Contains 1 HTH luxR-type DNA-binding domain. RuleBase RU000707V5 Spearmint SPM000792 Contains 1 response regulatory domain. Spearmint SPM000792

Ontologies

Keywords
Biological process	Transcription Transcription regulation RuleBase RU000707V5 Spearmint SPM000792
Ligand	DNA-binding RuleBase RU000707V5 Spearmint SPM000792
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro two-component signal transduction system (phosphorelay) Inferred from electronic annotation. Source: InterPro
Cellular component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular function	sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro transcription factor activity Inferred from electronic annotation. Source: InterPro two-component response regulator activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q1IKU7-1 [UniParc]. Last modified June 13, 2006. Version 1. Checksum: A5DB615AB7F985CF	FASTA	228	25,044
	10 20 30 40 50 60 MAQAKATNAR GIARILIADD DPIVRDILRN VLSARTEFSV VGEAKNGDES VRLVRELKPD 70 80 90 100 110 120 LLLLDLLMPN LPGLDALKEM TTTDSLVRTI VLTASITKQQ VLQALQLGAR GVVRKDALNE 130 140 150 160 170 180 LVAAIRAVLD GQYWLDGKIV PNVVQLLNEL AASSRTEAPR NDFGLTPREL EIVALVTEGC 190 200 210 220 GNREIATRLT ISEETVKRHL THIFDKVGMS TRLELALFAL DHNLARRA

References

[1]

"Complete sequence of Acidobacteria bacterium Ellin345." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Kiss H., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Kuske C., Janssen P.H., Richardson P. Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	CP000360 Genomic DNA. Translation: ABF42503.1.
RefSeq	YP_592577.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	4072761.
GenomeReviews	Gene locus Acid345_3502 in contig CP000360_GR.
KEGG	aba:Acid345_3502.
NMPDR	fig|204669.6.peg.3509.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	Q1IKU7.
OMA	Q1IKU7. PENTHRA.
Family and domain databases
InterPro	IPR001789. Sig_transdc_resp-reg_receiver. IPR000792. Tscrpt_reg_LuxR_C. IPR011991. Wing_hlx_DNA_bd. [Graphical view]
Gene3D	G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 1 hit.
Pfam	PF00196. GerE. 1 hit. PF00072. Response_reg. 1 hit. [Graphical view]
PRINTS	PR00038. HTHLUXR.
ProDom	PD000307. HTH_LuxR. 1 hit. PD000039. Response_reg. 1 hit. [Graphical view] [Entries sharing at least one domain]
SMART	SM00421. HTH_LUXR. 1 hit. SM00448. REC. 1 hit. [Graphical view]
PROSITE	PS00622. HTH_LUXR_1. 1 hit. PS50043. HTH_LUXR_2. 1 hit. PS50110. RESPONSE_REGULATORY. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q1IKU7_ACIBL

Accession

Primary (citable) accession number: Q1IKU7

Entry history

Integrated into UniProtKB/TrEMBL:	June 13, 2006
Last sequence update:	June 13, 2006
Last modified:	June 16, 2009
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)