Q1IK35 (Q1IK35_KORVE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Two component transcriptional regulator, LuxR family EMBL ABF42765.1

Gene names

Ordered Locus Names:

Acid345_3765

Organism

Koribacter versatilis (strain Ellin345)

Taxonomic identifier

204669 [NCBI]

Taxonomic lineage

Bacteria › Acidobacteria › Candidatus Koribacter

Protein attributes

Sequence length	277 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH luxR-type DNA-binding domain. RuleBase RU000707 SAAS SAAS000792 Contains 1 response regulatory domain. SAAS SAAS000792

Ontologies

Keywords
Biological process	Transcription Transcription regulation RuleBase RU000707 SAAS SAAS000792
Ligand	DNA-binding SAAS SAAS000792 RuleBase RU000707
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular function	sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro two-component response regulator activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q1IK35 [UniParc]. Last modified June 13, 2006. Version 1. Checksum: 5929408534AA5070	FASTA	277	30,420
	10 20 30 40 50 60 MSSEKIKTTN VTTLAPSAES NREFIRVVIA DSEAIFRVGI RKIFALEDDF RVVAQAENLA 70 80 90 100 110 120 QAVAAVQKFP TDILLFEVTL SSTAGEAITE IVGKSPNTRI IAVGNDIGEH DTCDFLRRGV 130 140 150 160 170 180 TGILSRSVSP DLLVRCIRKV HSGETWLDNR GVNWVIEAYR AQAAQLMAPR NQPRLSEKEL 190 200 210 220 230 240 QIIAGVTQGM KNKDIAHEIG TTEQVVKNYL RKVYDKLGVS DRLELALYCM HHRLLEKARG 250 260 270 AVIGTGEQPK PSVPTQAQAM PIPQAPDGSK PNPTGQR

References

[1]

"Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils." Ward N.L., Challacombe J.F., Janssen P.H., Henrissat B., Coutinho P.M., Wu M., Xie G., Haft D.H., Sait M., Badger J., Barabote R.D., Bradley B., Brettin T.S., Brinkac L.M., Bruce D., Creasy T., Daugherty S.C., Davidsen T.M. , DeBoy R.T., Detter J.C., Dodson R.J., Durkin A.S., Ganapathy A., Gwinn-Giglio M., Han C.S., Khouri H., Kiss H., Kothari S.P., Madupu R., Nelson K.E., Nelson W.C., Paulsen I., Penn K., Ren Q., Rosovitz M.J., Selengut J.D., Shrivastava S., Sullivan S.A., Tapia R., Thompson L.S., Watkins K.L., Yang Q., Yu C., Zafar N., Zhou L., Kuske C.R. Appl. Environ. Microbiol. 75:2046-2056(2009) [PubMed: 19201974] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Ellin345.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000360 Genomic DNA. Translation: ABF42765.1.
RefSeq	YP_592839.1. NC_008009.1.
3D structure databases
ProteinModelPortal	Q1IK35.
ModBase	Search...
Protein-protein interaction databases
STRING	Q1IK35.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4071049.
GenomeReviews	Gene locus Acid345_3765 in contig CP000360_GR.
KEGG	aba:Acid345_3765.
NMPDR	fig|204669.6.peg.3757.
PATRIC	31984774. VBICanKor57425_4016.
Phylogenomic databases
eggNOG	COG2197.
HOGENOM	HBG753323.
OMA	NTRIIAV.
ProtClustDB	CLSK2467778.
Family and domain databases
InterPro	IPR011006. CheY-like_superfamily. IPR016032. Sig_transdc_resp-reg_C-effctor. IPR001789. Sig_transdc_resp-reg_receiver. IPR000792. Tscrpt_reg_LuxR_C. IPR011991. WHTH_trsnscrt_rep_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 1 hit.
Pfam	PF00196. GerE. 1 hit. PF00072. Response_reg. 1 hit. [Graphical view]
PRINTS	PR00038. HTHLUXR.
SMART	SM00421. HTH_LUXR. 1 hit. SM00448. REC. 1 hit. [Graphical view]
SUPFAM	SSF46894. Bipartite_resp_reg_C-effector. 1 hit. SSF52172. CheY_like. 1 hit.
PROSITE	PS50043. HTH_LUXR_2. 1 hit. PS50110. RESPONSE_REGULATORY. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q1IK35_KORVE

Accession

Primary (citable) accession number: Q1IK35

Entry history

Integrated into UniProtKB/TrEMBL:	June 13, 2006
Last sequence update:	June 13, 2006
Last modified:	December 14, 2011
This is version 40 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)