Q1II40 (Q1II40_KORVE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Two component transcriptional regulator, winged helix family EMBL ABF43460.1

Gene names

Ordered Locus Names:

Acid345_4460

Organism

Koribacter versatilis (strain Ellin345)

Taxonomic identifier

204669 [NCBI]

Taxonomic lineage

Bacteria › Acidobacteria › Candidatus Koribacter

Protein attributes

Sequence length	230 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 response regulatory domain. SAAS SAAS001867

Ontologies

Keywords
Biological process	Transcription Transcription regulation SAAS SAAS001867 Two-component regulatory system SAAS SAAS001867
Ligand	DNA-binding SAAS SAAS001867
PTM	Phosphoprotein SAAS SAAS016032
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW two-component response regulator activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q1II40 [UniParc]. Last modified June 13, 2006. Version 1. Checksum: 5ACAE0E78CF00AE5	FASTA	230	25,623
	10 20 30 40 50 60 MKQILLIDDD IELTSLLTDY LKSEGFEVEA VHNGEQGLQK ALSGNYSIVV LDIMLPGISG 70 80 90 100 110 120 LDVLRRLRPQ SRIPVLLLTA RGEDVDRIVG LELGADDYVP KPFNTRELLA RIQAILRRVQ 130 140 150 160 170 180 GGQTPGAIVN VGDVTLDPGA RTVQRGGQKL DFTSVEFDLL RYLLENAGNV VPREELAERV 190 200 210 220 230 LGRRFSPFDR SIDMHISKIR RKLLDESDEL IKTVRGTGYI YARPVFAGSK

References

[1]

"Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils." Ward N.L., Challacombe J.F., Janssen P.H., Henrissat B., Coutinho P.M., Wu M., Xie G., Haft D.H., Sait M., Badger J., Barabote R.D., Bradley B., Brettin T.S., Brinkac L.M., Bruce D., Creasy T., Daugherty S.C., Davidsen T.M. , DeBoy R.T., Detter J.C., Dodson R.J., Durkin A.S., Ganapathy A., Gwinn-Giglio M., Han C.S., Khouri H., Kiss H., Kothari S.P., Madupu R., Nelson K.E., Nelson W.C., Paulsen I., Penn K., Ren Q., Rosovitz M.J., Selengut J.D., Shrivastava S., Sullivan S.A., Tapia R., Thompson L.S., Watkins K.L., Yang Q., Yu C., Zafar N., Zhou L., Kuske C.R. Appl. Environ. Microbiol. 75:2046-2056(2009) [PubMed: 19201974] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Ellin345.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000360 Genomic DNA. Translation: ABF43460.1.
RefSeq	YP_593534.1. NC_008009.1.
3D structure databases
ProteinModelPortal	Q1II40.
ModBase	Search...
Protein-protein interaction databases
STRING	Q1II40.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4070943.
GenomeReviews	Gene locus Acid345_4460 in contig CP000360_GR.
KEGG	aba:Acid345_4460.
NMPDR	fig|204669.6.peg.4439.
PATRIC	31986313. VBICanKor57425_4769.
Phylogenomic databases
eggNOG	COG0745.
HOGENOM	HBG753323.
OMA	DALMENF.
PhylomeDB	Q1II40.
ProtClustDB	CLSK775185.
Family and domain databases
InterPro	IPR011006. CheY-like_superfamily. IPR001867. Sig_transdc_resp-reg_C. IPR016032. Sig_transdc_resp-reg_C-effctor. IPR001789. Sig_transdc_resp-reg_receiver. IPR011991. WHTH_trsnscrt_rep_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 1 hit.
KO	K07662.
Pfam	PF00072. Response_reg. 1 hit. PF00486. Trans_reg_C. 1 hit. [Graphical view]
SMART	SM00448. REC. 1 hit. SM00862. Trans_reg_C. 1 hit. [Graphical view]
SUPFAM	SSF46894. Bipartite_resp_reg_C-effector. 1 hit. SSF52172. CheY_like. 1 hit.
PROSITE	PS50110. RESPONSE_REGULATORY. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q1II40_KORVE

Accession

Primary (citable) accession number: Q1II40

Entry history

Integrated into UniProtKB/TrEMBL:	June 13, 2006
Last sequence update:	June 13, 2006
Last modified:	January 25, 2012
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)