Q1IHC3 (Q1IHC3_KORVE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
TPR repeat protein EMBL ABF43727.1

Gene names

Ordered Locus Names:

Acid345_4728

Organism

Koribacter versatilis (strain Ellin345)

Taxonomic identifier

204669 [NCBI]

Taxonomic lineage

Bacteria › Acidobacteria › Candidatus Koribacter

Protein attributes

Sequence length	718 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Domain	Repeat RuleBase RU003537 TPR repeat RuleBase RU003339
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Molecular function	binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q1IHC3 [UniParc]. Last modified June 13, 2006. Version 1. Checksum: 0EB551EBCE693775	FASTA	718	79,727
	10 20 30 40 50 60 MTTKIGRNDR CPCGSGKKYK LCCLVRPSNA ARLMMAREHH EAGRLQPAAK IYEQVLRGDP 70 80 90 100 110 120 NNVEALHSLS ILASQIGETA TAERLMRQVL SLQPEHVGAL SNLGITLQSQ GRQEDAIACY 130 140 150 160 170 180 EKVIALRPHH AEAHNNLGNL RLAQGDLEQA IASYQRALDL KPDYADAHYN LGNAYQRRGN 190 200 210 220 230 240 WTQARESYRR AVASRPEFPE AQNNLGVVLR EMGETSAAIE AFERAIALRA EYADPLNNLG 250 260 270 280 290 300 VALQEQGRMS AAVEHYHQAI ALRPADVEAH FNLGSALQEL HRTDEAIAAY QSALEIQPGY 310 320 330 340 350 360 LPAYSNLLLL YASTGCVSPA EELAFALGWE RAALTEEERA EARSRRFVRT HLAGRKLRIG 370 380 390 400 410 420 IVSAELGEHA VADFLEPLLS EIDRSQFELL LFPTRLRDGA RTQRLHALGD KVISLAQVPD 430 440 450 460 470 480 AAAAEVIRKE GVDVLIDTTG HTRGCRLGIF AHRAAPVQMT WIGYWSTTGL TEVDWVLADD 490 500 510 520 530 540 KLPASFDAHF CEGIWRVPRL PLVYRGDTAL PQSAWTPSAD GTLWFGSLNR YSKIGQESLD 550 560 570 580 590 600 LWAKVMEAVP KSKLLLEDRT ADDTDAHQRI SAELATHGIG ADRIEFEPYI PGHERHMRLY 610 620 630 640 650 660 DRVDVALDTI PLNSGTTACD ALWMGVPLVA MEGNRTASRI AAGFLRAIGR TEWIADSEQN 670 680 690 700 710 YISKVVELSN NVELRKQLRG SQRQRMVESS LCDARGLARE LEQTFVQMFD RWTAAQTS

References

[1]

"Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils." Ward N.L., Challacombe J.F., Janssen P.H., Henrissat B., Coutinho P.M., Wu M., Xie G., Haft D.H., Sait M., Badger J., Barabote R.D., Bradley B., Brettin T.S., Brinkac L.M., Bruce D., Creasy T., Daugherty S.C., Davidsen T.M. , DeBoy R.T., Detter J.C., Dodson R.J., Durkin A.S., Ganapathy A., Gwinn-Giglio M., Han C.S., Khouri H., Kiss H., Kothari S.P., Madupu R., Nelson K.E., Nelson W.C., Paulsen I., Penn K., Ren Q., Rosovitz M.J., Selengut J.D., Shrivastava S., Sullivan S.A., Tapia R., Thompson L.S., Watkins K.L., Yang Q., Yu C., Zafar N., Zhou L., Kuske C.R. Appl. Environ. Microbiol. 75:2046-2056(2009) [PubMed: 19201974] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Ellin345.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000360 Genomic DNA. Translation: ABF43727.1.
RefSeq	YP_593801.1. NC_008009.1.
3D structure databases
ProteinModelPortal	Q1IHC3.
ModBase	Search...
Protein-protein interaction databases
STRING	Q1IHC3.
Protein family/group databases
CAZy	GT41. Glycosyltransferase Family 41.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4070666.
GenomeReviews	Gene locus Acid345_4728 in contig CP000360_GR.
KEGG	aba:Acid345_4728.
NMPDR	fig|204669.6.peg.4706.
PATRIC	31986889. VBICanKor57425_5051.
Phylogenomic databases
eggNOG	COG3914.
HOGENOM	HBG684498.
OMA	RIANAVS.
Family and domain databases
InterPro	IPR004027. SEC_C_motif. IPR006597. Sel1-like. IPR001440. TPR-1. IPR013026. TPR-contain. IPR011990. TPR-like_helical. IPR019734. TPR_repeat. [Graphical view]
Gene3D	G3DSA:1.25.40.10. TPR-like_helical. 2 hits.
Pfam	PF02810. SEC-C. 1 hit. PF00515. TPR_1. 6 hits. [Graphical view]
SMART	SM00671. SEL1. 3 hits. SM00028. TPR. 8 hits. [Graphical view]
PROSITE	PS50005. TPR. 8 hits. PS50293. TPR_REGION. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q1IHC3_KORVE

Accession

Primary (citable) accession number: Q1IHC3

Entry history

Integrated into UniProtKB/TrEMBL:	June 13, 2006
Last sequence update:	June 13, 2006
Last modified:	December 14, 2011
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)