Q1ICZ5 (Q1ICZ5_PSEE4) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003886
EC=5.4.99.- RuleBase RU003886

Gene names

Name:	rluC EMBL CAK14468.1
Ordered Locus Names:	PSEEN1609

Organism

Pseudomonas entomophila (strain L48) [Complete proteome] [HAMAP]

Taxonomic identifier

384676 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas entomophila

Protein attributes

Sequence length	318 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
Molecular function	Isomerase RuleBase RU003886 Lyase EMBL CAK14468.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro lyase activity Inferred from electronic annotation. Source: UniProtKB-KW pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q1ICZ5 [UniParc]. Last modified June 13, 2006. Version 1. Checksum: F90905266935DFFE	FASTA	318	35,432
	10 20 30 40 50 60 MTTNTPPTSG VQLIEVAPEL AGQRIDNFLI TALKGVPKTL VYRILRKGEV RVNKGRIKPE 70 80 90 100 110 120 YKLQAGDIVR VPPVRLPERD EPAPVAQGLL QRLEAAIVYE DKALIVMNKP AGIAVHGGSG 130 140 150 160 170 180 LSFGVIEALR QLRPDAKELE LVHRLDRDTS GLLMIAKKRS MLRHLHAALR GDGVDKRYMA 190 200 210 220 230 240 LVRGHWPTSK KQVNAPLQKS NLRSGERMVE VNDEGKEALT MFRVLRRFGE FATIVEARPI 250 260 270 280 290 300 TGRTHQIRVH TLHAGHMIAG DSKYGDEDFS REIRELGGKR LFLHAYQLTV PLPDGGELKL 310 EAPVDEVWAK TVERLSAT

References

[1]

"Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila." Vodovar N., Vallenet D., Cruveiller S., Rouy Z., Barbe V., Acosta C., Cattolico L., Jubin C., Lajus A., Segurens B., Vacherie B., Wincker P., Weissenbach J., Lemaitre B., Medigue C., Boccard F. Nat. Biotechnol. 24:673-679(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: L48.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CT573326 Genomic DNA. Translation: CAK14468.1.
RefSeq	YP_607274.1. NC_008027.1.
3D structure databases
ProteinModelPortal	Q1ICZ5.
SMR	Q1ICZ5. Positions 96-316.
ModBase	Search...
Protein-protein interaction databases
STRING	384676.PSEEN1609.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAK14468; CAK14468; PSEEN1609.
GeneID	4086215.
KEGG	pen:PSEEN1609.
PATRIC	19861380. VBIPseEnt83862_1536.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0564.
HOGENOM	HOG000275914.
KO	K06179.
OMA	HAANIKF.
ProtClustDB	CLSK867667.
Enzyme and pathway databases
BioCyc	PENT384676:GJB8-1514-MONOMER.
Family and domain databases
Gene3D	3.10.290.10. 1 hit.
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR006225. PsdUridine_synth_RluC/D. IPR006224. PsdUridine_synth_RluC/D_CS. IPR006145. PsdUridine_synth_RsuA/RluD. IPR002942. S4_RNA-bd. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. PF01479. S4. 1 hit. [Graphical view]
SMART	SM00363. S4. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMs	TIGR00005. rluA_subfam. 1 hit.
PROSITE	PS01129. PSI_RLU. 1 hit. PS50889. S4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q1ICZ5_PSEE4

Accession

Primary (citable) accession number: Q1ICZ5

Entry history

Integrated into UniProtKB/TrEMBL:	June 13, 2006
Last sequence update:	June 13, 2006
Last modified:	May 1, 2013
This is version 48 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)