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Protein
Submitted name:

Putative DNA ligase, ATP-dependent

Gene

PSEEN2767

Organism
Pseudomonas entomophila (strain L48)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPENT384676:GJB8-2624-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative DNA ligase, ATP-dependentImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:PSEEN2767Imported
OrganismiPseudomonas entomophila (strain L48)Imported
Taxonomic identifieri384676 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000000658: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi384676.PSEEN2767.

Structurei

3D structure databases

ProteinModelPortaliQ1I9X2.
SMRiQ1I9X2. Positions 533-817.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1I9X2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKPLQEYQR KRDFNATPEP AGKRARPRSA HALQYCIQKH DASHLHYDFR
60 70 80 90 100
LELDGTLKSW AIPKGPSLDP KVRRLAVHVE DHPLDYANFE GHIPEGHYGA
110 120 130 140 150
GDVIVWDRGV WEPEGDPREA YAKGKLRFRL QGEKLSGVWN LFRTHLAGKK
160 170 180 190 200
EQWMLVKSHD GQARSETDYS VVEALPDSVL SERTLPPRRP AKAPAATRKA
210 220 230 240 250
GRKPLPELLQ PQLATLVDSP PSGDWRYEVK FDGYRVLARI DGDDVRLFTR
260 270 280 290 300
NGHDWSAKMP RQVKALRALG LDAAWLDGEM VVVGDNGVAD FQALQNAFDT
310 320 330 340 350
EHDERITYYL FDLPWLGDED LRELPLQARR ATLAKLLEDN ASPLLSYSAD
360 370 380 390 400
FTEPVDSLLE SACRLELEGL IGKRADSPYI GRRSSDWIKL KCKQRQEFVI
410 420 430 440 450
VGYTDPKGSR HGFGALLLAL HDHDSGQLRY AGKVGTGFSA TTLDSILARL
460 470 480 490 500
KPLQAAKPPL VSPPTGADVR GVHWLKPHLL AEVAYAQMTR EGIVRHSVFH
510 520 530 540 550
GLRDDKPATD IDLEQAMPAK RAAQARPEGL PPLRLTHPDR VIDATTGTTK
560 570 580 590 600
REVAQYYAQV ADWLLPQLKD RPVALVRAPD GLGGELFFQK NPGQLHIPHV
610 620 630 640 650
LNYSKAQAGQ AAMVLNRADS LLGAVQMNML ELHTWNATDK DFDRPDRFVL
660 670 680 690 700
DLDPDPALPW KAMLEATQLT LTLLDELGLK VFLKTSGGKG MHLVVPLTRR
710 720 730 740 750
AGWDEVKDFS HALVEHMAGL FPDRLSAVSG PKNRVGRIFI DYLRNGRGAT
760 770 780 790 800
TVAAYSLRAR EGLPVSVPIW REELTQLKGA NQWNIGNLLT RLAEVDDPWA
810 820
DMAGTRQSIT VRMRKQLGID
Length:820
Mass (Da):91,655
Last modified:June 13, 2006 - v1
Checksum:i6078F892D7613C00
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CT573326 Genomic DNA. Translation: CAK15551.1.
RefSeqiWP_011533944.1. NC_008027.1.
YP_608347.1. NC_008027.1.

Genome annotation databases

EnsemblBacteriaiCAK15551; CAK15551; PSEEN2767.
GeneIDi4086175.
KEGGipen:PSEEN2767.
PATRICi19863646. VBIPseEnt83862_2647.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CT573326 Genomic DNA. Translation: CAK15551.1.
RefSeqiWP_011533944.1. NC_008027.1.
YP_608347.1. NC_008027.1.

3D structure databases

ProteinModelPortaliQ1I9X2.
SMRiQ1I9X2. Positions 533-817.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi384676.PSEEN2767.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAK15551; CAK15551; PSEEN2767.
GeneIDi4086175.
KEGGipen:PSEEN2767.
PATRICi19863646. VBIPseEnt83862_2647.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciPENT384676:GJB8-2624-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila."
    Vodovar N., Vallenet D., Cruveiller S., Rouy Z., Barbe V., Acosta C., Cattolico L., Jubin C., Lajus A., Segurens B., Vacherie B., Wincker P., Weissenbach J., Lemaitre B., Medigue C., Boccard F.
    Nat. Biotechnol. 24:673-679(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: L48Imported.

Entry informationi

Entry nameiQ1I9X2_PSEE4
AccessioniPrimary (citable) accession number: Q1I9X2
Entry historyi
Integrated into UniProtKB/TrEMBL: June 13, 2006
Last sequence update: June 13, 2006
Last modified: February 4, 2015
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.