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Reviewed, UniProtKB/Swiss-Prot Q1I563 (ALGL_PSEE4)

Last modified November 3, 2009. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Alginate lyase
    EC=4.2.2.3
Alternative name(s):
    Poly(beta-D-mannuronate) lyase
    Poly(mana) alginate lyase
Gene names
Name: algL
Ordered Locus Names: PSEEN4542
OrganismPseudomonas entomophila (strain L48) [Complete proteome] [HAMAP]
Taxonomic identifier384676 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length367 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology.

General annotation (Comments)

Function

Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond By similarity.

Catalytic activity

Eliminative cleavage of polysaccharides containing beta-D-mannuronate residues to give oligosaccharides with 4-deoxy-alpha-L-erythro-hex-4-enopyranuronosyl groups at their ends. HAMAP MF_00557

Subcellular location

Periplasm Potential.

Sequence similarities

Belongs to the polysaccharide lyase 5 family.

Ontologies

Keywords
   Cellular componentPeriplasm
   DomainSignal
   Molecular functionLyase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processalginic acid catabolic process

Inferred from electronic annotation. Source: HAMAP

   Cellular componentperiplasmic space

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionpoly(beta-D-mannuronate) lyase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2424 Potential
Chain25 – 367343Alginate lyase HAMAP MF_00557
PRO_1000061111

Sequences

Sequence LengthMass (Da)Tools
Q1I563-1 [UniParc].

Last modified June 13, 2006. Version 1.
Checksum: B564B2BBC028CF80

FASTA36740,986
        10         20         30         40         50         60 
MTIINRKTAP ALLALALFGG AAQAALVPPQ GYYEGIEKLK SSDGDFRCEA APRPYTGSLR 

        70         80         90        100        110        120 
FRSKYEGSDK ARATLNVASE KAFRASTKDI TTLEKGVSKM VGQYMRDGRP AQLDCALTWL 

       130        140        150        160        170        180 
GTWARADALM SSDYNHTGKS MRKWALGSMS GSWLRLKFSN SQPLAAHQAE AEQIEKWFAR 

       190        200        210        220        230        240 
LAQQTVRDWS GLPLEKINNH SYWAAWSVMA TAVATDRRDL FDWAVKEYKV GANQVDEQGF 

       250        260        270        280        290        300 
LPNELKRRQR ALAYHNYALP PLAMIASFAQ ANGVDLRKEN NFALQRLGEG VLAGARDPSQ 

       310        320        330        340        350        360 
FTAHAGVKQD LHDLKIDSKY AWLEPWCALY HCVGDTLERK HDMQPFDSFR LGGDVTRVYD 


PGAESKK 

« Hide

References

[1]"Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila."
Vodovar N., Vallenet D., Cruveiller S., Rouy Z., Barbe V., Acosta C., Cattolico L., Jubin C., Lajus A., Segurens B., Vacherie B., Wincker P., Weissenbach J., Lemaitre B., Medigue C., Boccard F.
Nat. Biotechnol. 24:673-679(2006) [PubMed: 16699499] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

CT573326 Genomic DNA. Translation: CAK17222.1.
RefSeqYP_610006.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGQ1I563.

Protein family/group databases

CAZyPL5. Polysaccharide Lyase Family 5.

Genome annotation databases

GeneID4089652.
GenomeReviewsGene locus PSEEN4542 in contig CT573326_GR.
KEGGpen:PSEEN4542.
NMPDRfig|384676.6.peg.3938.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMQ1I563.
OMARSKYEGS.

Enzyme and pathway databases

BioCycPENT384676:PSEEN4542-MON.

Family and domain databases

HAMAPMF_00557.
[Tree]
InterProIPR008397. Alginate_lyase.
[Graphical view]
Gene3DG3DSA:1.50.10.110. Alginate_lyase. 1 hit.
PfamPF05426. Alginate_lyase. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameALGL_PSEE4
AccessionPrimary (citable) accession number: Q1I563
Entry history
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: June 13, 2006
Last modified: November 3, 2009
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents