Q1I563 (ALGL_PSEE4) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 38.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Alginate lyase EC=4.2.2.3 Alternative name(s): Poly(beta-D-mannuronate) lyase Poly(mana) alginate lyase | ||||
| Gene names |
| ||||
| Organism | Pseudomonas entomophila (strain L48) [Complete proteome] [HAMAP] | ||||
| Taxonomic identifier | 384676 [NCBI] | ||||
| Taxonomic lineage | Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas |
Protein attributes
| Sequence length | 367 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Inferred from homology |
General annotation (Comments)
| Function | Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond By similarity. HAMAP MF_00557 |
| Catalytic activity | Eliminative cleavage of polysaccharides containing beta-D-mannuronate residues to give oligosaccharides with 4-deoxy-alpha-L-erythro-hex-4-enopyranuronosyl groups at their ends. HAMAP MF_00557 |
| Subcellular location | Periplasm Potential HAMAP MF_00557. |
| Sequence similarities | Belongs to the polysaccharide lyase 5 family. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Periplasm |
| Domain | Signal |
| Molecular function | Lyase |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | alginic acid catabolic process Inferred from electronic annotation. Source: InterPro |
| Cellular component | periplasmic space Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular function | poly(beta-D-mannuronate) lyase activity Inferred from electronic annotation. Source: EC |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||
Molecule processing | ||||||||
|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 24 | 24 | Potential | |||||
| Chain | 25 – 367 | 343 | Alginate lyase HAMAP MF_00557 | PRO_1000061111 | ||||
Sequences
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References
| [1] | "Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila." Vodovar N., Vallenet D., Cruveiller S., Rouy Z., Barbe V., Acosta C., Cattolico L., Jubin C., Lajus A., Segurens B., Vacherie B., Wincker P., Weissenbach J., Lemaitre B., Medigue C., Boccard F. Nat. Biotechnol. 24:673-679(2006) [PubMed: 16699499] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: L48. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | CT573326 Genomic DNA. Translation: CAK17222.1. |
| RefSeq | YP_610006.1. NC_008027.1. |
3D structure databases | |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | Q1I563. |
Protein family/group databases | |
| CAZy | PL5. Polysaccharide Lyase Family 5. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| GeneID | 4089652. |
| GenomeReviews | Gene locus PSEEN4542 in contig CT573326_GR. |
| KEGG | pen:PSEEN4542. |
| NMPDR | fig|384676.6.peg.3938. |
| PATRIC | 19867148. VBIPseEnt83862_4379. |
Organism-specific databases | |
| CMR | Search... |
Phylogenomic databases | |
| eggNOG | NOG42597. |
| HOGENOM | HBG336064. |
| OMA | AAWSVMA. |
| ProtClustDB | PRK00325. |
Enzyme and pathway databases | |
| BioCyc | PENT384676:PSEEN4542-MONOMER. |
Family and domain databases | |
| HAMAP | MF_00557. Alginate_lyase. [Tree] |
| InterPro | IPR022859. Alginate_lyase. IPR008397. Alginate_lyase_dom. IPR008929. Chondroitin_lyas. [Graphical view] |
| Gene3D | G3DSA:1.50.10.110. Alginate_lyase. 1 hit. |
| KO | K01729. |
| Pfam | PF05426. Alginate_lyase. 1 hit. [Graphical view] |
| SUPFAM | SSF48230. Chondroitin_lyas. 1 hit. |
| ProtoNet | Search... |
Entry information
| Entry name | ALGL_PSEE4 | ||||||||
| Accession | Primary (citable) accession number: Q1I563 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Prokaryotic Protein Annotation Program | ||||||||
Relevant documents
| SIMILARITY comments Index of protein domains and families |

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