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Q1I2T6 (Q1I2T6_PSEE4) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 55. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribonuclease PH HAMAP-Rule MF_00564

Short name=RNase PH HAMAP-Rule MF_00564
EC=2.7.7.56 HAMAP-Rule MF_00564
Alternative name(s):
tRNA nucleotidyltransferase HAMAP-Rule MF_00564
Gene names
Name:rph HAMAP-Rule MF_00564 EMBL CAK18050.1
Ordered Locus Names:PSEEN5439 EMBL CAK18050.1
OrganismPseudomonas entomophila (strain L48) [Complete proteome] [HAMAP] EMBL CAK18050.1
Taxonomic identifier384676 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length253 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates By similarity. HAMAP-Rule MF_00564 SAAS SAAS002381

Catalytic activity

tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate. HAMAP-Rule MF_00564 SAAS SAAS002381

Sequence similarities

Belongs to the RNase PH family. HAMAP-Rule MF_00564

Sequences

Sequence LengthMass (Da)Tools
Q1I2T6 [UniParc].

Last modified June 13, 2006. Version 1.
Checksum: A7797FC0E393D1D6

FASTA25327,109
        10         20         30         40         50         60 
MLGRFKVPVQ VSQMKRPSGR AADQLRSIRI TRNYTKHAEG SVLVEFGDTK VICTVSVENG 

        70         80         90        100        110        120 
VPRFLKGQGQ GWLTAEYGML PRSTGERNQR EASRGKQGGR TLEIQRLIGR SLRAALDMSK 

       130        140        150        160        170        180 
LGDITLYVDC DVIQADGGTR TASITGAMVA LCDALAVIKK RGGLKGGNPL KHMIAAVSVG 

       190        200        210        220        230        240 
MYQGEAVLDL DYLEDSAAET DLNVVMTSAG GFIEVQGTAE GAPFQPEDFN AMLALAQKGM 

       250 
GEIFELQQAA LAD 

« Hide

References

[1]"Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila."
Vodovar N., Vallenet D., Cruveiller S., Rouy Z., Barbe V., Acosta C., Cattolico L., Jubin C., Lajus A., Segurens B., Vacherie B., Wincker P., Weissenbach J., Lemaitre B., Medigue C., Boccard F.
Nat. Biotechnol. 24:673-679(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: L48.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CT573326 Genomic DNA. Translation: CAK18050.1.
RefSeqYP_610833.2. NC_008027.1.

3D structure databases

ProteinModelPortalQ1I2T6.
SMRQ1I2T6. Positions 14-253.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING384676.PSEEN5439.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAK18050; CAK18050; PSEEN5439.
GeneID4087439.
KEGGpen:PSEEN5439.
PATRIC19868854. VBIPseEnt83862_5220.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0689.
HOGENOMHOG000229516.
KOK00989.
OMAKGQGWVT.
OrthoDBEOG6CZQQP.
ProtClustDBPRK00173.

Enzyme and pathway databases

BioCycPENT384676:GJB8-5161-MONOMER.

Family and domain databases

Gene3D3.30.230.70. 1 hit.
HAMAPMF_00564. RNase_PH.
InterProIPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR027408. PNPase/RNase_PH_dom.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR002381. RNase_PH_bac-type.
IPR018336. RNase_PH_CS.
[Graphical view]
PfamPF01138. RNase_PH. 1 hit.
PF03725. RNase_PH_C. 1 hit.
[Graphical view]
SUPFAMSSF54211. SSF54211. 1 hit.
SSF55666. SSF55666. 1 hit.
TIGRFAMsTIGR01966. RNasePH. 1 hit.
PROSITEPS01277. RIBONUCLEASE_PH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ1I2T6_PSEE4
AccessionPrimary (citable) accession number: Q1I2T6
Entry history
Integrated into UniProtKB/TrEMBL: June 13, 2006
Last sequence update: June 13, 2006
Last modified: April 16, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)