Skip Header

Contribute Send feedback
Read comments (?) or add your own

Q1H5E3 (Q1H5E3_ARATH) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
At5g16870 EMBL ABF58939.1
Submitted name:
Peptidyl-tRNA hydrolase II (PTH2) family protein EMBL AED92351.1
Gene names
Ordered Locus Names:At5g16870
ORF Names:AT5G16870 EMBL AED92351.1
OrganismArabidopsis thaliana (Mouse-ear cress) EMBL ABF58939.1
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length169 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   Molecular functionHydrolase EMBL AED92351.1
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Molecular functionaminoacyl-tRNA hydrolase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q1H5E3 [UniParc].

Last modified June 27, 2006. Version 1.
Checksum: AD1D5C5F8A24DF32

FASTA16918,507
        10         20         30         40         50         60 
MDLTWLSALI VGAALGYCIG TRRSKPVVAA VDKDIKTQSS KSPLEIEKLA DILDDFKMVL 

        70         80         90        100        110        120 
VVRNDLKMGK GKIAAQCSHA TLGLYKKLVR RAPKALDCWE ECAQPKVVVK IEDEDEMLEL 

       130        140        150        160 
QERAKSLKLP THITIDAGRT QIAPNSRTVM AILGPVEVVD EVTGGLKLL

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana."
Kazusa DNA Research Institute, Cold Spring Harbor and Washington University in St Louis Sequencing Consortium, European Union Arabidopsis Genome Sequencing Consortium
Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K. expand/collapse author list , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.
Nature 408:823-826(2000) [PubMed: 11130714] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[3]"Arabidopsis ORF clones."
Kim C.J., Chen H., Quinitio C., Shinn P., Ecker J.R.
Submitted (MAY-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BT025521 mRNA. Translation: ABF58939.1.
CP002688 Genomic DNA. Translation: AED92351.1.
IPIIPI00537200.
RefSeqNP_568340.1. NM_121693.1.
UniGeneAt.31625.

3D structure databases

ProteinModelPortalQ1H5E3.
SMRQ1H5E3. Positions 54-169.
ModBaseSearch...

Proteomic databases

PRIDEQ1H5E3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT5G16870.1; AT5G16870.1; AT5G16870.
GeneID831550.
KEGGath:AT5G16870.
NMPDRfig|3702.1.peg.23847.

Phylogenomic databases

eggNOGKOG3282.
InParanoidQ1H5E3.
OMAKSLVMEY.
ProtClustDBCLSN2684061.

Gene expression databases

GenevestigatorQ1H5E3.

Family and domain databases

InterProIPR023476. Pep_tRNA_hydro_II_dom.
IPR002833. Pep_tRNA_hydro_PTH2.
[Graphical view]
Gene3DG3DSA:3.40.1490.10. G3DSA:3.40.1490.10. 1 hit.
KOK04794.
PANTHERPTHR12649:SF6. PTHR12649:SF6. 1 hit.
PfamPF01981. PTH2. 1 hit.
[Graphical view]
SUPFAMSSF102462. SSF102462. 1 hit.
TIGRFAMsTIGR00283. Arch_pth2. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ1H5E3_ARATH
AccessionPrimary (citable) accession number: Q1H5E3
Entry history
Integrated into UniProtKB/TrEMBL: June 27, 2006
Last sequence update: June 27, 2006
Last modified: January 25, 2012
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info