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Q1GWR5 (Q1GWR5_SPHAL) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Alpha amylase, catalytic region EMBL ABF51907.1
Gene names
Ordered Locus Names:Sala_0183
OrganismSphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) (Sphingomonas alaskensis) [Complete proteome] [HAMAP]
Taxonomic identifier317655 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Sphingomonadales › Sphingomonadaceae › Sphingopyxis

Protein attributes

Sequence length600 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ABF51907.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functioncatalytic activity

Inferred from electronic annotation. Source: InterPro

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2020 Potential EMBL ABF51907.1
Chain21 – 600580 Potential EMBL ABF51907.1
PRO_5000119698

Sequences

Sequence LengthMass (Da)Tools
Q1GWR5 [UniParc].

Last modified June 27, 2006. Version 1.
Checksum: 40B2F80D3B861673

FASTA60064,785
        10         20         30         40         50         60 
MMRRLAAFAL LLAPLPVAAD EAALRVRPAN DEIIYFVLPD RFENGDASND RGGLKGDRLA 

        70         80         90        100        110        120 
TGYDPAAKGF FHGGDLAGLT KRLGYIQGLG ATAIWFAPIF KNKPVQGAPG QESAGYHGYW 

       130        140        150        160        170        180 
VTDFTQVDPH FGTNAEFKAF VDAAHARGMK VYMDIIANHT ADVITYKEGA ATDFRYRSLA 

       190        200        210        220        230        240 
DYPWSRRGGV DGPAINPGFA GDGVASADNW AKLTDPAFAY TPVVPKGEER VKVPAWLNDP 

       250        260        270        280        290        300 
IYYHNRGNSD WVGESALYGD FAGLDDLATE NPRVVQGFID IFGRWIDEFG IDGFRIDTAK 

       310        320        330        340        350        360 
HVNPEFWRAF VPAMQARAKA RGIPNFHIFG EVYIDGVDPG ALAAWTHSAG LPAVLDFSFA 

       370        380        390        400        410        420 
RAVIDSVSGT RGTDLFARLF DGDVLYKGGA DAALQLPTFL GNHDMGRFAM FVKQANPDAD 

       430        440        450        460        470        480 
DAELLARTML GHAMLLTLRG VPTIYYGDEQ GFVSDGHDQL AREDMFASKV AVYNDNDLIG 

       490        500        510        520        530        540 
TDATTADANF DTAHPLYRHI AALAGIRRST PALMRGATKL RAFSDKPGLL AVSRFDPDTG 

       550        560        570        580        590        600 
REVVLAYNTS AAPLRATISV DMKSAAFTAL HGDCPARPVA PGSLSISLPA FGTLICQASE

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References

[1]"Complete sequence of chromosome of Sphingopyxis alaskensis RB2256."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Munk A.C., Chertkov O., Gilna P. expand/collapse author list , Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Cavicchioli R., Robb F., Ertan H., Schut F., Ting L.M., Richardson P.
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 13593 / LMG 18877 / RB2256.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000356 Genomic DNA. Translation: ABF51907.1.
RefSeqYP_615240.1. NC_008048.1.

3D structure databases

ProteinModelPortalQ1GWR5.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4082292.
GenomeReviewsGene locus Sala_0183 in contig CP000356_GR.
KEGGsal:Sala_0183.
NMPDRfig|317655.9.peg.163.
PATRIC23689509. VBISphAla23391_0204.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG400745.
OMAFHIFGEV.
ProtClustDBCLSK890899.

Enzyme and pathway databases

BioCycSALA317655:SALA_0183-MONOMER.

Family and domain databases

InterProIPR015902. Alpha_amylase.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
Gene3DG3DSA:3.20.20.80. Glyco_hydro_cat. 2 hits.
PANTHERPTHR10357. Alpha_amylase. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. Glyco_hydro_cat. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ1GWR5_SPHAL
AccessionPrimary (citable) accession number: Q1GWR5
Entry history
Integrated into UniProtKB/TrEMBL: June 27, 2006
Last sequence update: June 27, 2006
Last modified: December 14, 2011
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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