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Q1GWF9

- Q1GWF9_SPHAL

UniProt

Q1GWF9 - Q1GWF9_SPHAL

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Protein
Submitted name:

DNA ligase (ATP)

Gene
Sala_0290
Organism
Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) (Sphingomonas alaskensis)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSALA317655:GHHY-289-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase (ATP)Imported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:Sala_0290Imported
OrganismiSphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) (Sphingomonas alaskensis)Imported
Taxonomic identifieri317655 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingopyxis
ProteomesiUP000006578: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi317655.Sala_0290.

Structurei

3D structure databases

ProteinModelPortaliQ1GWF9.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK01971.
OMAiLETWHAR.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1GWF9-1 [UniParc]FASTAAdd to Basket

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MKALAALIDR LIYTRSRNSK LALIADYLRC TPDPDRGWAI AALTESLDFP    50
AVKAGMVRAL LATRVDEQLF RLSRHFVGDT AETAALLWPE PFQPSPSGEG 100
LGVGAIGLAQ GVEPPPQTPP LKGRGLTVTQ AVDALAAASR SDAPAILADL 150
LDRLDADGRY ALLKLALGGM RVGVSARLAK QAFAQAFDVP VDDVEELWHA 200
IPPPYAPLFA WGEGRAERPD LADVAFFRPF MLAHPLEEES VDLADYAAEW 250
KWDGIRVQIV RGGGETRIYS RGGEEIGAAF PELIAAFDQD AVIDGELLVR 300
GEVQGGEAAS FNALQQRLGR KTVSKKMLAD YPAFVRVYDL LAVDGDDLRP 350
LPWTERRRRL EAFVPRLASS HFDLSQLIEA ADFDDLAERR AGARDAAIEG 400
VMLKRRDAPY VAGRRAGLWY KWKRDPLTAD CVMMYAQRGN GRRASFYSDY 450
TFGCWSDAGE LLPVGKAYSG FTDEELKWLD KFVREHTLNR FGPVREVEKS 500
LVLEVAFDSI HSSKRHKSGL AMRFPRISRI RRDKPAEEAD RIATLRAMVT 550
Length:550
Mass (Da):60,878
Last modified:June 27, 2006 - v1
Checksum:i5B212B56DA7789B2
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000356 Genomic DNA. Translation: ABF52013.1.
RefSeqiYP_615346.1. NC_008048.1.

Genome annotation databases

EnsemblBacteriaiABF52013; ABF52013; Sala_0290.
GeneIDi4082650.
KEGGisal:Sala_0290.
PATRICi23689721. VBISphAla23391_0310.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000356 Genomic DNA. Translation: ABF52013.1 .
RefSeqi YP_615346.1. NC_008048.1.

3D structure databases

ProteinModelPortali Q1GWF9.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 317655.Sala_0290.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABF52013 ; ABF52013 ; Sala_0290 .
GeneIDi 4082650.
KEGGi sal:Sala_0290.
PATRICi 23689721. VBISphAla23391_0310.

Phylogenomic databases

HOGENOMi HOG000036007.
KOi K01971.
OMAi LETWHAR.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci SALA317655:GHHY-289-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 13593 / LMG 18877 / RB2256.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RB2256Imported.

Entry informationi

Entry nameiQ1GWF9_SPHAL
AccessioniPrimary (citable) accession number: Q1GWF9
Entry historyi
Integrated into UniProtKB/TrEMBL: June 27, 2006
Last sequence update: June 27, 2006
Last modified: July 9, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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