Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

Q1GWF9 (Q1GWF9_SPHAL) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 54. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Protein attributes

Sequence length550 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
Q1GWF9 [UniParc].

Last modified June 27, 2006. Version 1.
Checksum: 5B212B56DA7789B2

FASTA55060,878
        10         20         30         40         50         60 
MKALAALIDR LIYTRSRNSK LALIADYLRC TPDPDRGWAI AALTESLDFP AVKAGMVRAL 

        70         80         90        100        110        120 
LATRVDEQLF RLSRHFVGDT AETAALLWPE PFQPSPSGEG LGVGAIGLAQ GVEPPPQTPP 

       130        140        150        160        170        180 
LKGRGLTVTQ AVDALAAASR SDAPAILADL LDRLDADGRY ALLKLALGGM RVGVSARLAK 

       190        200        210        220        230        240 
QAFAQAFDVP VDDVEELWHA IPPPYAPLFA WGEGRAERPD LADVAFFRPF MLAHPLEEES 

       250        260        270        280        290        300 
VDLADYAAEW KWDGIRVQIV RGGGETRIYS RGGEEIGAAF PELIAAFDQD AVIDGELLVR 

       310        320        330        340        350        360 
GEVQGGEAAS FNALQQRLGR KTVSKKMLAD YPAFVRVYDL LAVDGDDLRP LPWTERRRRL 

       370        380        390        400        410        420 
EAFVPRLASS HFDLSQLIEA ADFDDLAERR AGARDAAIEG VMLKRRDAPY VAGRRAGLWY 

       430        440        450        460        470        480 
KWKRDPLTAD CVMMYAQRGN GRRASFYSDY TFGCWSDAGE LLPVGKAYSG FTDEELKWLD 

       490        500        510        520        530        540 
KFVREHTLNR FGPVREVEKS LVLEVAFDSI HSSKRHKSGL AMRFPRISRI RRDKPAEEAD 

       550 
RIATLRAMVT 

« Hide

References

[1]"Complete sequence of chromosome of Sphingopyxis alaskensis RB2256."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Munk A.C., Chertkov O., Gilna P. expand/collapse author list , Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Cavicchioli R., Robb F., Ertan H., Schut F., Ting L.M., Richardson P.
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 13593 / LMG 18877 / RB2256.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000356 Genomic DNA. Translation: ABF52013.1.
RefSeqYP_615346.1. NC_008048.1.

3D structure databases

ProteinModelPortalQ1GWF9.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING317655.Sala_0290.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABF52013; ABF52013; Sala_0290.
GeneID4082650.
KEGGsal:Sala_0290.
PATRIC23689721. VBISphAla23391_0310.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000036007.
KOK01971.
OMAKHAKPAL.
OrthoDBEOG6Q8HXT.
ProtClustDBPRK09247.

Enzyme and pathway databases

BioCycSALA317655:GHHY-289-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ1GWF9_SPHAL
AccessionPrimary (citable) accession number: Q1GWF9
Entry history
Integrated into UniProtKB/TrEMBL: June 27, 2006
Last sequence update: June 27, 2006
Last modified: November 13, 2013
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)