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Protein
Submitted name:

DNA ligase (ATP)

Gene

Sala_0290

Organism
Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) (Sphingomonas alaskensis)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSALA317655:GHHY-289-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase (ATP)Imported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:Sala_0290Imported
OrganismiSphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) (Sphingomonas alaskensis)Imported
Taxonomic identifieri317655 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingopyxis
ProteomesiUP000006578: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi317655.Sala_0290.

Structurei

3D structure databases

ProteinModelPortaliQ1GWF9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK01971.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1GWF9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKALAALIDR LIYTRSRNSK LALIADYLRC TPDPDRGWAI AALTESLDFP
60 70 80 90 100
AVKAGMVRAL LATRVDEQLF RLSRHFVGDT AETAALLWPE PFQPSPSGEG
110 120 130 140 150
LGVGAIGLAQ GVEPPPQTPP LKGRGLTVTQ AVDALAAASR SDAPAILADL
160 170 180 190 200
LDRLDADGRY ALLKLALGGM RVGVSARLAK QAFAQAFDVP VDDVEELWHA
210 220 230 240 250
IPPPYAPLFA WGEGRAERPD LADVAFFRPF MLAHPLEEES VDLADYAAEW
260 270 280 290 300
KWDGIRVQIV RGGGETRIYS RGGEEIGAAF PELIAAFDQD AVIDGELLVR
310 320 330 340 350
GEVQGGEAAS FNALQQRLGR KTVSKKMLAD YPAFVRVYDL LAVDGDDLRP
360 370 380 390 400
LPWTERRRRL EAFVPRLASS HFDLSQLIEA ADFDDLAERR AGARDAAIEG
410 420 430 440 450
VMLKRRDAPY VAGRRAGLWY KWKRDPLTAD CVMMYAQRGN GRRASFYSDY
460 470 480 490 500
TFGCWSDAGE LLPVGKAYSG FTDEELKWLD KFVREHTLNR FGPVREVEKS
510 520 530 540 550
LVLEVAFDSI HSSKRHKSGL AMRFPRISRI RRDKPAEEAD RIATLRAMVT
Length:550
Mass (Da):60,878
Last modified:June 27, 2006 - v1
Checksum:i5B212B56DA7789B2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000356 Genomic DNA. Translation: ABF52013.1.
RefSeqiWP_011540604.1. NC_008048.1.
YP_615346.1. NC_008048.1.

Genome annotation databases

EnsemblBacteriaiABF52013; ABF52013; Sala_0290.
GeneIDi4082650.
KEGGisal:Sala_0290.
PATRICi23689721. VBISphAla23391_0310.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000356 Genomic DNA. Translation: ABF52013.1.
RefSeqiWP_011540604.1. NC_008048.1.
YP_615346.1. NC_008048.1.

3D structure databases

ProteinModelPortaliQ1GWF9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi317655.Sala_0290.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABF52013; ABF52013; Sala_0290.
GeneIDi4082650.
KEGGisal:Sala_0290.
PATRICi23689721. VBISphAla23391_0310.

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK01971.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciSALA317655:GHHY-289-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 13593 / LMG 18877 / RB2256Imported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RB2256Imported.

Entry informationi

Entry nameiQ1GWF9_SPHAL
AccessioniPrimary (citable) accession number: Q1GWF9
Entry historyi
Integrated into UniProtKB/TrEMBL: June 27, 2006
Last sequence update: June 27, 2006
Last modified: February 4, 2015
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.