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Q1GWF9

- Q1GWF9_SPHAL

UniProt

Q1GWF9 - Q1GWF9_SPHAL

Protein
Submitted name:

DNA ligase (ATP)

Gene

Sala_0290

Organism
Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) (Sphingomonas alaskensis)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 57 (01 Oct 2014)
      Sequence version 1 (27 Jun 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSALA317655:GHHY-289-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase (ATP)Imported (EC:6.5.1.1Imported)
    Gene namesi
    Ordered Locus Names:Sala_0290Imported
    OrganismiSphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) (Sphingomonas alaskensis)Imported
    Taxonomic identifieri317655 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingopyxis
    ProteomesiUP000006578: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi317655.Sala_0290.

    Structurei

    3D structure databases

    ProteinModelPortaliQ1GWF9.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiLETWHAR.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q1GWF9-1 [UniParc]FASTAAdd to Basket

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    MKALAALIDR LIYTRSRNSK LALIADYLRC TPDPDRGWAI AALTESLDFP    50
    AVKAGMVRAL LATRVDEQLF RLSRHFVGDT AETAALLWPE PFQPSPSGEG 100
    LGVGAIGLAQ GVEPPPQTPP LKGRGLTVTQ AVDALAAASR SDAPAILADL 150
    LDRLDADGRY ALLKLALGGM RVGVSARLAK QAFAQAFDVP VDDVEELWHA 200
    IPPPYAPLFA WGEGRAERPD LADVAFFRPF MLAHPLEEES VDLADYAAEW 250
    KWDGIRVQIV RGGGETRIYS RGGEEIGAAF PELIAAFDQD AVIDGELLVR 300
    GEVQGGEAAS FNALQQRLGR KTVSKKMLAD YPAFVRVYDL LAVDGDDLRP 350
    LPWTERRRRL EAFVPRLASS HFDLSQLIEA ADFDDLAERR AGARDAAIEG 400
    VMLKRRDAPY VAGRRAGLWY KWKRDPLTAD CVMMYAQRGN GRRASFYSDY 450
    TFGCWSDAGE LLPVGKAYSG FTDEELKWLD KFVREHTLNR FGPVREVEKS 500
    LVLEVAFDSI HSSKRHKSGL AMRFPRISRI RRDKPAEEAD RIATLRAMVT 550
    Length:550
    Mass (Da):60,878
    Last modified:June 27, 2006 - v1
    Checksum:i5B212B56DA7789B2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000356 Genomic DNA. Translation: ABF52013.1.
    RefSeqiYP_615346.1. NC_008048.1.

    Genome annotation databases

    EnsemblBacteriaiABF52013; ABF52013; Sala_0290.
    GeneIDi4082650.
    KEGGisal:Sala_0290.
    PATRICi23689721. VBISphAla23391_0310.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000356 Genomic DNA. Translation: ABF52013.1 .
    RefSeqi YP_615346.1. NC_008048.1.

    3D structure databases

    ProteinModelPortali Q1GWF9.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 317655.Sala_0290.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABF52013 ; ABF52013 ; Sala_0290 .
    GeneIDi 4082650.
    KEGGi sal:Sala_0290.
    PATRICi 23689721. VBISphAla23391_0310.

    Phylogenomic databases

    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi LETWHAR.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci SALA317655:GHHY-289-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 13593 / LMG 18877 / RB2256Imported.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: RB2256Imported.

    Entry informationi

    Entry nameiQ1GWF9_SPHAL
    AccessioniPrimary (citable) accession number: Q1GWF9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 27, 2006
    Last sequence update: June 27, 2006
    Last modified: October 1, 2014
    This is version 57 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3