Q1GWF9 (Q1GWF9_SPHAL) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase (ATP) EMBL ABF52013.1
EC=6.5.1.1 EMBL ABF52013.1

Gene names

Ordered Locus Names:

Sala_0290 EMBL ABF52013.1

Organism

Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) (Sphingomonas alaskensis) [Complete proteome] [HAMAP] EMBL ABF52013.1

Taxonomic identifier

317655 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Sphingomonadales › Sphingomonadaceae › Sphingopyxis › Sphingopyxis alaskensis

Protein attributes

Sequence length	550 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABF52013.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q1GWF9 [UniParc]. Last modified June 27, 2006. Version 1. Checksum: 5B212B56DA7789B2	FASTA	550	60,878
	10 20 30 40 50 60 MKALAALIDR LIYTRSRNSK LALIADYLRC TPDPDRGWAI AALTESLDFP AVKAGMVRAL 70 80 90 100 110 120 LATRVDEQLF RLSRHFVGDT AETAALLWPE PFQPSPSGEG LGVGAIGLAQ GVEPPPQTPP 130 140 150 160 170 180 LKGRGLTVTQ AVDALAAASR SDAPAILADL LDRLDADGRY ALLKLALGGM RVGVSARLAK 190 200 210 220 230 240 QAFAQAFDVP VDDVEELWHA IPPPYAPLFA WGEGRAERPD LADVAFFRPF MLAHPLEEES 250 260 270 280 290 300 VDLADYAAEW KWDGIRVQIV RGGGETRIYS RGGEEIGAAF PELIAAFDQD AVIDGELLVR 310 320 330 340 350 360 GEVQGGEAAS FNALQQRLGR KTVSKKMLAD YPAFVRVYDL LAVDGDDLRP LPWTERRRRL 370 380 390 400 410 420 EAFVPRLASS HFDLSQLIEA ADFDDLAERR AGARDAAIEG VMLKRRDAPY VAGRRAGLWY 430 440 450 460 470 480 KWKRDPLTAD CVMMYAQRGN GRRASFYSDY TFGCWSDAGE LLPVGKAYSG FTDEELKWLD 490 500 510 520 530 540 KFVREHTLNR FGPVREVEKS LVLEVAFDSI HSSKRHKSGL AMRFPRISRI RRDKPAEEAD 550 RIATLRAMVT

References

[1]

"Complete sequence of chromosome of Sphingopyxis alaskensis RB2256." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Munk A.C., Chertkov O., Gilna P. , Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Cavicchioli R., Robb F., Ertan H., Schut F., Ting L.M., Richardson P. Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 13593 / LMG 18877 / RB2256.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000356 Genomic DNA. Translation: ABF52013.1.
RefSeq	YP_615346.1. NC_008048.1.
3D structure databases
ProteinModelPortal	Q1GWF9.
ModBase	Search...
Protein-protein interaction databases
STRING	317655.Sala_0290.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABF52013; ABF52013; Sala_0290.
GeneID	4082650.
KEGG	sal:Sala_0290.
PATRIC	23689721. VBISphAla23391_0310.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000036007.
KO	K01971.
OMA	KHAKPAL.
ProtClustDB	PRK09247.
Enzyme and pathway databases
BioCyc	SALA317655:GHHY-340-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q1GWF9_SPHAL

Accession

Primary (citable) accession number: Q1GWF9

Entry history

Integrated into UniProtKB/TrEMBL:	June 27, 2006
Last sequence update:	June 27, 2006
Last modified:	May 1, 2013
This is version 49 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)