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Protein
Submitted name:

Probable Ring hydroxylating alpha subunit

Gene

benA

Organism
Ruegeria sp. (strain TM1040) (Silicibacter sp.)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi83 – 831Iron-sulfur (2Fe-2S)Combined sources
Metal bindingi85 – 851Iron-sulfur (2Fe-2S); via pros nitrogenCombined sources
Metal bindingi103 – 1031Iron-sulfur (2Fe-2S)Combined sources
Metal bindingi106 – 1061Iron-sulfur (2Fe-2S); via pros nitrogenCombined sources

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

2Fe-2SUniRule annotationCombined sources, Iron, Iron-sulfur, Metal-binding

Enzyme and pathway databases

BioCyciRSP292414:GHCT-3278-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Probable Ring hydroxylating alpha subunitImported
Gene namesi
Name:benAImported
Ordered Locus Names:TM1040_3219Imported
Encoded oniPlasmid megaplasmid TM1040Imported
OrganismiRuegeria sp. (strain TM1040) (Silicibacter sp.)Imported
Taxonomic identifieri292414 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRuegeria
Proteomesi
  • UP000000636 Componenti: Plasmid megaplasmid TM1040

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi199 ↔ 202Combined sources

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3N0QX-ray1.80A1-408[»]
ProteinModelPortaliQ1GMC3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini42 – 147106RieskeInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 Rieske domain.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000217650.
KOiK00479.
OMAiVEVHDCN.
OrthoDBiEOG6W19DT.

Family and domain databases

Gene3Di2.102.10.10. 1 hit.
3.90.380.10. 1 hit.
InterProiIPR017941. Rieske_2Fe-2S.
IPR015881. Ring-hydroxy_dOase_2Fe2S_BS.
IPR015879. Ring_hydroxy_dOase_asu_C_dom.
IPR001663. Rng_hydr_dOase-A.
[Graphical view]
PfamiPF00355. Rieske. 1 hit.
PF00848. Ring_hydroxyl_A. 1 hit.
[Graphical view]
PRINTSiPR00090. RNGDIOXGNASE.
SUPFAMiSSF50022. SSF50022. 1 hit.
PROSITEiPS51296. RIESKE. 1 hit.
PS00570. RING_HYDROXYL_ALPHA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1GMC3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHSNINTLIA NHRAGHALDQ AFYTDAEVFQ TDLQEIFYKE WLFAIPACEL
60 70 80 90 100
DKPGSYVTHQ VGNYNVIIVR GADNVIRAFH NACRHRGSVI CKAKKGNNPK
110 120 130 140 150
LVCPYHQWTY ELDGRLLWAR DMGPDFEPSR HGLKTVHCRE LAGLIYICLA
160 170 180 190 200
DEAPDFERFA EVARPYLEVH DLSNAKVAHE SSIVERGNWK LVWENNRECY
210 220 230 240 250
HCGGNHPALC RTFPDDPSVT GIEGGETPSN LQAHFDRCEQ AGMPSGFHLS
260 270 280 290 300
GDGQFRVARM PLKEGAESYT MDGKTAVRRW LGRAAFADAG SLLKFHYPTT
310 320 330 340 350
WNHFLSDHSI VFRVTPISPT ETEVTTKWLV HKDAVEGVDY DLQRLTEVWI
360 370 380 390 400
ATNDEDREVV EFNQMGINSP AYEPGPYSPT QESGVLQFVE WYLSTLKRNS

GPHAVAAE
Length:408
Mass (Da):46,091
Last modified:June 27, 2006 - v1
Checksum:i2BD6974F1A07694C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000376 Genomic DNA. Translation: ABF62193.1.
RefSeqiWP_011536837.1. NC_008043.1.

Genome annotation databases

EnsemblBacteriaiABF62193; ABF62193; TM1040_3219.
KEGGisit:TM1040_3219.
PATRICi23382866. VBIRueSp69653_0295.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000376 Genomic DNA. Translation: ABF62193.1.
RefSeqiWP_011536837.1. NC_008043.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3N0QX-ray1.80A1-408[»]
ProteinModelPortaliQ1GMC3.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

DNASUi4075361.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABF62193; ABF62193; TM1040_3219.
KEGGisit:TM1040_3219.
PATRICi23382866. VBIRueSp69653_0295.

Phylogenomic databases

HOGENOMiHOG000217650.
KOiK00479.
OMAiVEVHDCN.
OrthoDBiEOG6W19DT.

Enzyme and pathway databases

BioCyciRSP292414:GHCT-3278-MONOMER.

Family and domain databases

Gene3Di2.102.10.10. 1 hit.
3.90.380.10. 1 hit.
InterProiIPR017941. Rieske_2Fe-2S.
IPR015881. Ring-hydroxy_dOase_2Fe2S_BS.
IPR015879. Ring_hydroxy_dOase_asu_C_dom.
IPR001663. Rng_hydr_dOase-A.
[Graphical view]
PfamiPF00355. Rieske. 1 hit.
PF00848. Ring_hydroxyl_A. 1 hit.
[Graphical view]
PRINTSiPR00090. RNGDIOXGNASE.
SUPFAMiSSF50022. SSF50022. 1 hit.
PROSITEiPS51296. RIESKE. 1 hit.
PS00570. RING_HYDROXYL_ALPHA. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TM1040Imported.
  2. "Crystal structure of a Putative aromatic-ring hydroxylating dioxygenase (TM1040_3219) from SILICIBACTER SP. TM1040 at 1.80 A resolution."
    Joint Center for Structural Genomics (JCSG)
    Submitted (MAY-2010) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) IN COMPLEX WITH IRON-SULFUR (2FE-2S), DISULFIDE BONDS.

Entry informationi

Entry nameiQ1GMC3_RUEST
AccessioniPrimary (citable) accession number: Q1GMC3
Entry historyi
Integrated into UniProtKB/TrEMBL: June 27, 2006
Last sequence update: June 27, 2006
Last modified: March 16, 2016
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, PlasmidImported, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.