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Protein
Submitted name:

Uncharacterized protein

Gene

TM1040_0329

Organism
Ruegeria sp. (strain TM1040) (Silicibacter sp.)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi126ZincCombined sources1
Metal bindingi143ZincCombined sources1
Metal bindingi207ZincCombined sources1

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Metal-bindingCombined sources, ZincCombined sources

Enzyme and pathway databases

BioCyciRSP292414:GHCT-338-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Ordered Locus Names:TM1040_0329Imported
OrganismiRuegeria sp. (strain TM1040) (Silicibacter sp.)Imported
Taxonomic identifieri292414 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRuegeria
Proteomesi
  • UP000000636 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi292414.TM1040_0329.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3ORUX-ray1.11A1-233[»]
3SIYX-ray1.35A/B/C/D1-233[»]
SMRiQ1GJV4.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ1GJV4.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini37 – 201DUF1989InterPro annotationAdd BLAST165

Phylogenomic databases

eggNOGiENOG4105EIG. Bacteria.
COG3665. LUCA.
HOGENOMiHOG000251570.
KOiK09967.
OMAiDTLLCPC.
OrthoDBiPOG091H09QA.

Family and domain databases

InterProiIPR018959. DUF1989.
[Graphical view]
PfamiPF09347. DUF1989. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1GJV4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTSFDRPFEA ARPDGENPSA HETLAEGGRL RPEATYTIPA RQGRAIRMAQ
60 70 80 90 100
GEALMVINRD GSQIGDFWAF VEGDCGEYLS MEHLRPTLRR VSPRPGDVLV
110 120 130 140 150
SNRRRPILTL LEDSSPGVHD TLVASCDVHR YAQLGHEGYH DNCTDNLRMA
160 170 180 190 200
LGALGLRPTT VPCPLNLWMN TPVVEGGAME WRPPVSRRGD HVLFRAELDV
210 220 230
VVVISCCPMD LLPINGEEAQ PRALDVRLRP RPA
Length:233
Mass (Da):25,836
Last modified:June 27, 2006 - v1
Checksum:i0A6028A5CA43BCAD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000377 Genomic DNA. Translation: ABF63062.1.
RefSeqiWP_011537677.1. NC_008044.1.

Genome annotation databases

EnsemblBacteriaiABF63062; ABF63062; TM1040_0329.
KEGGisit:TM1040_0329.
PATRICi23384707. VBIRueSp69653_1188.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000377 Genomic DNA. Translation: ABF63062.1.
RefSeqiWP_011537677.1. NC_008044.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3ORUX-ray1.11A1-233[»]
3SIYX-ray1.35A/B/C/D1-233[»]
SMRiQ1GJV4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi292414.TM1040_0329.

Protocols and materials databases

DNASUi4076225.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABF63062; ABF63062; TM1040_0329.
KEGGisit:TM1040_0329.
PATRICi23384707. VBIRueSp69653_1188.

Phylogenomic databases

eggNOGiENOG4105EIG. Bacteria.
COG3665. LUCA.
HOGENOMiHOG000251570.
KOiK09967.
OMAiDTLLCPC.
OrthoDBiPOG091H09QA.

Enzyme and pathway databases

BioCyciRSP292414:GHCT-338-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ1GJV4.

Family and domain databases

InterProiIPR018959. DUF1989.
[Graphical view]
PfamiPF09347. DUF1989. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ1GJV4_RUEST
AccessioniPrimary (citable) accession number: Q1GJV4
Entry historyi
Integrated into UniProtKB/TrEMBL: June 27, 2006
Last sequence update: June 27, 2006
Last modified: November 2, 2016
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.