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Q1GIY0 (Q1GIY0_SILST) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 45. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
2-dehydro-3-deoxyphosphooctonate aldolase HAMAP MF_00056
EC=2.5.1.55 HAMAP MF_00056
Alternative name(s):
3-deoxy-D-manno-octulosonic acid 8-phosphate synthase HAMAP MF_00056
KDO-8-phosphate synthase HAMAP MF_00056
Phospho-2-dehydro-3-deoxyoctonate aldolase HAMAP MF_00056
Gene names
Name:kdsA HAMAP MF_00056
Ordered Locus Names:TM1040_0653
OrganismSilicibacter sp. (strain TM1040) [Complete proteome] [HAMAP]
Taxonomic identifier292414 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Ruegeria

Protein attributes

Sequence length277 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Phosphoenolpyruvate + D-arabinose 5-phosphate + H2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate. HAMAP MF_00056 SAAS SAAS006269

Pathway

Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis. HAMAP MF_00056 SAAS SAAS006269

Carbohydrate biosynthesis; 3-deoxy-D-manno-octulosonate biosynthesis; 3-deoxy-D-manno-octulosonate from D-ribulose 5-phosphate: step 2/3. HAMAP MF_00056 SAAS SAAS006269

Subcellular location

Cytoplasm By similarity HAMAP MF_00056 SAAS SAAS006269.

Sequence similarities

Belongs to the KdsA family. HAMAP MF_00056

Sequences

Sequence LengthMass (Da)Tools
Q1GIY0 [UniParc].

Last modified June 27, 2006. Version 1.
Checksum: 603630FEEE75663F

FASTA27729,275
        10         20         30         40         50         60 
MKKIDINGLT IGNDCPLTVI AGPCQLESAD HAQMIAGKLK EACDAAGAQF IFKASYDKAN 

        70         80         90        100        110        120 
RTSLSGKRGL GIDKGLEVLA GVRDTFGVPV LTDVHTEAQC IVAGDVVDVL QIPAFLCRQT 

       130        140        150        160        170        180 
DMLLAAGNTG KAVNIKKGQF LAPWDMDNVV AKVESTGNDK ILLTERGTSF GYNALVADMR 

       190        200        210        220        230        240 
GLPRMAQTGY PVVMDATHSV QQPGGQGGST GGQREFAPVM ARAAVSLGIA SVFIETHEDP 

       250        260        270 
DNAPSDGPNM IYLKDMPQLI ETLMGFDALA KANPIRI

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References

[1]"Complete sequence of chromosome of Silicibacter sp. TM1040."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Goodwin L., Thompson L.S., Gilna P. expand/collapse author list , Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Belas R., Moran M.A., Buchan A., Gonzalez J.M., Schell M.A., Sun F., Richardson P.
Submitted (MAY-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: TM1040.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000377 Genomic DNA. Translation: ABF63386.1.
RefSeqYP_612648.1. NC_008044.1.

3D structure databases

ProteinModelPortalQ1GIY0.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ1GIY0.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4078166.
GenomeReviewsGene locus TM1040_0653 in contig CP000377_GR.
KEGGsit:TM1040_0653.
NMPDRfig|292414.1.peg.2761.
PATRIC23385388. VBIRueSp69653_1526.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2877.
HOGENOMHBG575990.
OMAITERGAM.
PhylomeDBQ1GIY0.
ProtClustDBPRK05198.

Enzyme and pathway databases

BioCycSSP292414:TM1040_0653-MONOMER.

Family and domain databases

HAMAPMF_00056. KDO8P_synth.
[Tree]
InterProIPR013785. Aldolase_TIM.
IPR006218. DAHP1/KDSA.
IPR006269. KDO8P_synthase.
[Graphical view]
Gene3DG3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KOK01627.
PANTHERPTHR21057:SF2. KDO8P_synthase. 1 hit.
PfamPF00793. DAHP_synth_1. 1 hit.
[Graphical view]
TIGRFAMsTIGR01362. KDO8P_synth. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ1GIY0_SILST
AccessionPrimary (citable) accession number: Q1GIY0
Entry history
Integrated into UniProtKB/TrEMBL: June 27, 2006
Last sequence update: June 27, 2006
Last modified: January 25, 2012
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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