Q1GIC3 (Q1GIC3_SILST) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
5-aminolevulinate synthase EMBL ABF63593.1
EC=2.3.1.37 EMBL ABF63593.1

Gene names

Ordered Locus Names:

TM1040_0860

Organism

Silicibacter sp. (strain TM1040) [Complete proteome] [HAMAP]

Taxonomic identifier

292414 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Ruegeria

Protein attributes

Sequence length	432 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU003693
Sequence similarities	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. RuleBase RU003693

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU003693
Molecular function	Acyltransferase EMBL ABF63593.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	tetrapyrrole biosynthetic process Inferred from electronic annotation. Source: InterPro
Molecular function	5-aminolevulinate synthase activity Inferred from electronic annotation. Source: EC pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro transferase activity, transferring nitrogenous groups Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q1GIC3 [UniParc]. Last modified June 27, 2006. Version 1. Checksum: C46836844E422F14	FASTA	432	47,380
	10 20 30 40 50 60 MLHGAGRDQD AAKPDWHRHK AMEMTVDYTA QLDAAIERLH EEGRYRTFID IERRRGQFPH 70 80 90 100 110 120 AVWTRPDGSE QDITVWCGND YLGMGQHPVV LKAMRDAIDA TGAGSGGTRN ISGTTVYHKE 130 140 150 160 170 180 LESELADLHG KEAALLFTSA YIANDATLST LPKLLPGLII YSDALNHASM IEGVRRNGGA 190 200 210 220 230 240 KRVFRHNDVA HLRELLEADD PAAPKLIAFE SVYSMDGDFG PIAEICDLAD EFNALTYIDE 250 260 270 280 290 300 VHAVGMYGPR GGGVTERDNL AHRIDIINGT LAKAYGVMGG YIAASAKMCD AIRSYAPGFI 310 320 330 340 350 360 FTTSLAPSIA AGAAASVRHL KTAQDLRDKH QEQARYLKTR LKMMGLPVID HGSHIVPVIV 370 380 390 400 410 420 GDPVHTKKLS DMLLSDFGIY VQPINFPTVP RGTERLRFTP SPVHGPSEMD HLIRAMDKLW 430 SHCALNRAEL AG

References

[1]

"Complete sequence of chromosome of Silicibacter sp. TM1040." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Goodwin L., Thompson L.S., Gilna P. , Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Belas R., Moran M.A., Buchan A., Gonzalez J.M., Schell M.A., Sun F., Richardson P. Submitted (MAY-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: TM1040.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000377 Genomic DNA. Translation: ABF63593.1.
RefSeq	YP_612855.2. NC_008044.1.
3D structure databases
ProteinModelPortal	Q1GIC3.
SMR	Q1GIC3. Positions 26-420.
ModBase	Search...
Protein-protein interaction databases
STRING	Q1GIC3.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4076035.
GenomeReviews	Gene locus TM1040_0860 in contig CP000377_GR.
KEGG	sit:TM1040_0860.
NMPDR	fig|292414.1.peg.2944.
PATRIC	23385822. VBIRueSp69653_1738.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0156.
HOGENOM	HBG649839.
OMA	NARCFAG.
PhylomeDB	Q1GIC3.
ProtClustDB	PRK09064.
Enzyme and pathway databases
BioCyc	SSP292414:TM1040_0860-MONOMER.
Family and domain databases
InterPro	IPR010961. 4pyrrol_synth_NH2levulA_synth. IPR001917. Aminotrans_II_pyridoxalP_BS. IPR004839. Aminotransferase_I/II. IPR015424. PyrdxlP-dep_Trfase_major_dom. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
Gene3D	G3DSA:3.40.640.10. PyrdxlP-dep_Trfase_major_sub1. 1 hit. G3DSA:3.90.1150.10. PyrdxlP-dep_Trfase_major_sub2. 1 hit.
KO	K00643.
Pfam	PF00155. Aminotran_1_2. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR01821. 5aminolev_synth. 1 hit.
PROSITE	PS00599. AA_TRANSFER_CLASS_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q1GIC3_SILST

Accession

Primary (citable) accession number: Q1GIC3

Entry history

Integrated into UniProtKB/TrEMBL:	June 27, 2006
Last sequence update:	June 27, 2006
Last modified:	December 14, 2011
This is version 49 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)