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Protein

Ribose import ATP-binding protein RbsA

Gene

rbsA

Organism
Ruegeria sp. (strain TM1040) (Silicibacter sp.)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Part of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system.UniRule annotation

Catalytic activityi

ATP + H2O + monosaccharide(Out) = ADP + phosphate + monosaccharide(In).UniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi39 – 468ATPUniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-HAMAP
  2. D-ribose transmembrane transporter activity Source: UniProtKB-HAMAP
  3. monosaccharide-transporting ATPase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Biological processi

Sugar transport, Transport

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciRSP292414:GHCT-1208-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribose import ATP-binding protein RbsAUniRule annotation (EC:3.6.3.17UniRule annotation)
Gene namesi
Name:rbsAUniRule annotation
Ordered Locus Names:TM1040_1188
OrganismiRuegeria sp. (strain TM1040) (Silicibacter sp.)
Taxonomic identifieri292414 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRuegeria
ProteomesiUP000000636 Componenti: Chromosome

Subcellular locationi

Cell inner membrane UniRule annotation; Peripheral membrane protein UniRule annotation

GO - Cellular componenti

  1. ATP-binding cassette (ABC) transporter complex Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 511511Ribose import ATP-binding protein RbsAPRO_0000261104Add
BLAST

Interactioni

Subunit structurei

The complex is composed of two ATP-binding proteins (RbsA), two transmembrane proteins (RbsC and RbsD) and a solute-binding protein (RbsB).UniRule annotation

Protein-protein interaction databases

STRINGi292414.TM1040_1188.

Structurei

3D structure databases

ProteinModelPortaliQ1GHE5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini7 – 242236ABC transporter 1UniRule annotationAdd
BLAST
Domaini256 – 500245ABC transporter 2UniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. [View classification]UniRule annotation
Contains 2 ABC transporter domains.UniRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiCOG1129.
KOiK10441.
OMAiIAENMFM.
OrthoDBiEOG6QK4RR.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR015861. ABC_transpr_RbsA.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00005. ABC_tran. 2 hits.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 2 hits.
PS51254. RBSA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1GHE5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTGDVILQIS NLTKSFGPVK ALKGVDFELR RGEIHAIAGE NGAGKSTLMN
60 70 80 90 100
IIDGILQPDS GEIRLDGTPV EIPSPAAAQK MGIGFVHQEI ALCPDVSVAE
110 120 130 140 150
NIFMAATNSS RSFLMDYKGI EAKAREVFAQ LSSIDPSVLV RDLSISNQQL
160 170 180 190 200
VEIAKALTLD CRVLILDEPT AALTEAEAQV LFKIMRRLAD QGISLIYISH
210 220 230 240 250
RMVEIFDNCD RVSVFRDGRY VTTQDVAKIT PADVVRAMVG REIGDLYPEK
260 270 280 290 300
QRPEACSTTE VLRVENLCEA ERFHDVSFSL HKGEILGFAG LIGAGRSEIA
310 320 330 340 350
KGVCALEGQV TGRLWLNGEP LALRDYQDSI DAGIVYLSED RKGDGVFLDM
360 370 380 390 400
SIASNVSALK VEQVASALGL IQPGREIEQA DRLGRKLNLK CGTLQDPVSS
410 420 430 440 450
LSGGNQQKVA LAKMLSVNPR LIFLDEPTRG VDVGAKAEIY RILRDLAEEG
460 470 480 490 500
AGIVVISSEL PELIGLCDRV LVIHEGCLSG EVSGPDMTEE NIMHLASGTQ
510
QGTGAASVAA Q
Length:511
Mass (Da):54,981
Last modified:June 27, 2006 - v1
Checksum:i95EA57AC99C02712
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000377 Genomic DNA. Translation: ABF63921.1.
RefSeqiWP_011538528.1. NC_008044.1.
YP_613183.1. NC_008044.1.

Genome annotation databases

EnsemblBacteriaiABF63921; ABF63921; TM1040_1188.
GeneIDi4077797.
KEGGisit:TM1040_1188.
PATRICi23386518. VBIRueSp69653_2082.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000377 Genomic DNA. Translation: ABF63921.1.
RefSeqiWP_011538528.1. NC_008044.1.
YP_613183.1. NC_008044.1.

3D structure databases

ProteinModelPortaliQ1GHE5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi292414.TM1040_1188.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABF63921; ABF63921; TM1040_1188.
GeneIDi4077797.
KEGGisit:TM1040_1188.
PATRICi23386518. VBIRueSp69653_2082.

Phylogenomic databases

eggNOGiCOG1129.
KOiK10441.
OMAiIAENMFM.
OrthoDBiEOG6QK4RR.

Enzyme and pathway databases

BioCyciRSP292414:GHCT-1208-MONOMER.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR015861. ABC_transpr_RbsA.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00005. ABC_tran. 2 hits.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 2 hits.
PS51254. RBSA. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TM1040.

Entry informationi

Entry nameiRBSA_RUEST
AccessioniPrimary (citable) accession number: Q1GHE5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: June 27, 2006
Last modified: January 7, 2015
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.