Q1GFF1 (Q1GFF1_SILST) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Choline dehydrogenase RuleBase RU003969
EC=1.1.99.1 RuleBase RU003969

Gene names

Ordered Locus Names:

TM1040_1882

Organism

Silicibacter sp. (strain TM1040) [Complete proteome] [HAMAP]

Taxonomic identifier

292414 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Ruegeria

Protein attributes

Sequence length	551 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine By similarity. SAAS SAAS007867
Catalytic activity	Choline + acceptor = betaine aldehyde + reduced acceptor. RuleBase RU003969 SAAS SAAS007867
Cofactor	FAD By similarity. SAAS SAAS007867 RuleBase RU003968
Pathway	Amine and polyamine biosynthesis; betaine biosynthesis via choline pathway; betaine aldehyde from choline (cytochrome c reductase route): step 1/1. SAAS SAAS007867 RuleBase RU003969
Sequence similarities	Belongs to the GMC oxidoreductase family. RuleBase RU003968

Ontologies

Keywords
Ligand	FAD SAAS SAAS011533 Flavoprotein SAAS SAAS011533 RuleBase RU003968
Molecular function	Oxidoreductase SAAS SAAS007867
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	glycine betaine biosynthetic process from choline Inferred from electronic annotation. Source: InterPro
Molecular function	choline dehydrogenase activity Inferred from electronic annotation. Source: EC flavin adenine dinucleotide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q1GFF1 [UniParc]. Last modified June 27, 2006. Version 1. Checksum: E0D6E8ECA2BEB08D	FASTA	551	60,527
	10 20 30 40 50 60 MNADYVIVGA GSAGCAMAYR LSEAGKSVLV IEHGGTDAGP FIQMPGALSY PMNMSMYDWG 70 80 90 100 110 120 YKSQPEPHLG GRELVTPRGK VIGGSSSING MVYVRGHAGD YNHWAETGAT GWSYADVLPY 130 140 150 160 170 180 FKRMETWDDR GHGGDPDWRG TDGPLHVTRG PRDNPLHDAF VKSGQQAGYP VTKDYNGQQQ 190 200 210 220 230 240 EGFGPMEMTV HKGRRWSAAN AYLKPALKRD NCDLIRALAR KVVIEDGRAV GVEVERGGKI 250 260 270 280 290 300 EVIRANIEVI LAASSLNSPK LLMLSGIGPA AHLAEHGIDV IADRPGVGQN LQDHLEFYFQ 310 320 330 340 350 360 FASKKPITLY KYWNLFGKAL VGAQWLFTKT GLGASNQFES AAFIRSDKGI DYPDIQYHFL 370 380 390 400 410 420 PIAVRYDGQA AAEGHGFQAH VGPMRSQSRG EVTLASADPN AAPKILFNYM STEQDWIDFR 430 440 450 460 470 480 KCVRLTREIF AQDAMKPFVK HEIQPGTDLQ TDEEIDGFLR EHVESAYHPC GTCKMGAVDD 490 500 510 520 530 540 PMAVVDPECR VIGVEGLRVA DSSIFPRITN GNLNGPSIMT GEKASDHILG RRLPSSNAEP 550 WFNPNWQTSQ R

References

[1]

"Complete sequence of chromosome of Silicibacter sp. TM1040." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Goodwin L., Thompson L.S., Gilna P. , Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Belas R., Moran M.A., Buchan A., Gonzalez J.M., Schell M.A., Sun F., Richardson P. Submitted (MAY-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: TM1040.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000377 Genomic DNA. Translation: ABF64615.1.
RefSeq	YP_613877.1. NC_008044.1.
3D structure databases
ProteinModelPortal	Q1GFF1.
ModBase	Search...
Protein-protein interaction databases
STRING	Q1GFF1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4077379.
GenomeReviews	Gene locus TM1040_1882 in contig CP000377_GR.
KEGG	sit:TM1040_1882.
NMPDR	fig|292414.1.peg.161.
PATRIC	23387972. VBIRueSp69653_2799.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG2303.
HOGENOM	HBG734713.
OMA	GPFIQMP.
PhylomeDB	Q1GFF1.
ProtClustDB	PRK02106.
Enzyme and pathway databases
BioCyc	SSP292414:TM1040_1882-MONOMER.
Family and domain databases
InterPro	IPR011533. Choline_dehydrogenase. IPR012132. GMC_OxRdtase. IPR000172. GMC_OxRdtase_N. IPR007867. GMC_OxRtase_C. [Graphical view]
KO	K00108.
Pfam	PF05199. GMC_oxred_C. 1 hit. PF00732. GMC_oxred_N. 1 hit. [Graphical view]
PIRSF	PIRSF000137. Alcohol_oxidase. 1 hit.
TIGRFAMs	TIGR01810. BetA. 1 hit.
PROSITE	PS00623. GMC_OXRED_1. 1 hit. PS00624. GMC_OXRED_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q1GFF1_SILST

Accession

Primary (citable) accession number: Q1GFF1

Entry history

Integrated into UniProtKB/TrEMBL:	June 27, 2006
Last sequence update:	June 27, 2006
Last modified:	December 14, 2011
This is version 51 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)