Uncharacterised peroxidase-related - Silicibacter sp. (strain TM1040)

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Q1GDR9 (Q1GDR9_SILST) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 39. History...

Clusters with 100%, 90%, 50% identity |

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Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
Uncharacterised peroxidase-related EMBL ABF65197.1

Gene names

Ordered Locus Names:

TM1040_2465

Organism

Silicibacter sp. (strain TM1040) [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Ruegeria

Protein attributes

Sequence length	190 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity By similarity. SAAS SAAS004675
Catalytic activity	2 R'-SH + ROOH = R'-S-S-R' + H₂O + ROH. SAAS SAAS004675

Ontologies

Keywords
Domain	Redox-active center SAAS SAAS004675
Molecular function	Antioxidant SAAS SAAS004675 Oxidoreductase Peroxidase SAAS SAAS004675 EMBL ABF65197.1
PTM	Disulfide bond SAAS SAAS004675
Technical term	3D-structure PDB 2PFX Complete proteome
Gene Ontology (GO)
Molecular function	peroxidase activity Inferred from electronic annotation. Source: UniProtKB-KW peroxiredoxin activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q1GDR9 [UniParc].

Last modified June 27, 2006. Version 1.
Checksum: 3BF5575F7E0AAAF2
Show »

190

21,422

        10         20         30         40         50         60 
MTKPKEPTAL DLPMADPLPD ETQKYFEICQ EKLGMVPNVL KAYAFNVEKL NAFTAMYNDL 

        70         80         90        100        110        120 
MLGESQLSKL EREMIAVVVS SINKCFYCLV AHGAAVRQLS GDPQLGEMLV MNYRVAPLDA 

       130        140        150        160        170        180 
RQRVMLDFAA KMTRASAEIE EADREVLRSH GFNDRDIWDI ANVTGFFNMT NRVASATAMM 

       190 
PNAEYHGQFR

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete sequence of chromosome of Silicibacter sp. TM1040." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Goodwin L., Thompson L.S., Gilna P. Richardson P. Submitted (MAY-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: TM1040.
[2]	"Crystal structure of uncharacterized peroxidase-related protein (YP_614459.1) from Silicibacter sp. TM1040 at 1.70 A resolution." Joint Center for Structural Genomics (JCSG) Submitted (APR-2007) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.70 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CP000377 Genomic DNA. Translation: ABF65197.1.

RefSeq

YP_614459.1. NC_008044.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2PFX	X-ray	1.70	A/B	1-190	[»]

ProteinModelPortal

SMR

Q1GDR9. Positions 1-190.

ModBase

Protein-protein interaction databases

STRING

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

GeneID

GenomeReviews

Gene locus TM1040_2465 in contig CP000377_GR.

KEGG

sit:TM1040_2465.

NMPDR

fig|292414.1.peg.816.

PATRIC

23389202. VBIRueSp69653_3405.

Organism-specific databases

CMR

Phylogenomic databases

eggNOG

HOGENOM

OMA

ProtClustDB

Enzyme and pathway databases

BioCyc

SSP292414:TM1040_2465-MONOMER.

Family and domain databases

InterPro

IPR004675. AhpD_core.
IPR003779. CMD.
IPR010195. Uncharacterised_peroxidase-rel.
[Graphical view]

Pfam

PF02627. CMD. 1 hit.
[Graphical view]

TIGRFAMs

TIGR00778. AhpD_dom. 1 hit.
TIGR01926. Peroxid_rel. 1 hit.

ProtoNet

Entry information

Entry name

Q1GDR9_SILST

Accession

Primary (citable) accession number: Q1GDR9

Entry history

Integrated into UniProtKB/TrEMBL:	June 27, 2006
Last sequence update:	June 27, 2006
Last modified:	January 25, 2012
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info