Putative esterase/lipase/thioesterase - Silicibacter sp. (strain TM1040)

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Q1GDP2 (Q1GDP2_SILST) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 30. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
Putative esterase/lipase/thioesterase EMBL ABF65224.1

Gene names

Ordered Locus Names:

TM1040_2492

Organism

Silicibacter sp. (strain TM1040) [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Ruegeria

Protein attributes

Sequence length	261 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 2PBL Complete proteome
Gene Ontology (GO)
Molecular function	hydrolase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q1GDP2 [UniParc].

Last modified June 27, 2006. Version 1.
Checksum: 8C5697D0A810247A
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261

28,612

        10         20         30         40         50         60 
MELDDAYANG AYIEGAADYP PRWAASAEDF RNSLQDRARL NLSYGEGDRH KFDLFLPEGT 

        70         80         90        100        110        120 
PVGLFVFVHG GYWMAFDKSS WSHLAVGALS KGWAVAMPSY ELCPEVRISE ITQQISQAVT 

       130        140        150        160        170        180 
AAAKEIDGPI VLAGHSAGGH LVARMLDPEV LPEAVGARIR NVVPISPLSD LRPLLRTSMN 

       190        200        210        220        230        240 
EKFKMDADAA IAESPVEMQN RYDAKVTVWV GGAERPAFLD QAIWLVEAWD ADHVIAFEKH 

       250        260 
HFNVIEPLAD PESDLVAVIT A

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete sequence of chromosome of Silicibacter sp. TM1040." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Goodwin L., Thompson L.S., Gilna P. Richardson P. Submitted (MAY-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: TM1040.
[2]	"Crystal structure of putative thioesterase (YP_614486.1) from Silicibacter sp. TM1040 at 1.79 A resolution." Joint Center for Structural Genomics (JCSG) Submitted (MAR-2007) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.79 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CP000377 Genomic DNA. Translation: ABF65224.1.

RefSeq

YP_614486.1. NC_008044.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2PBL	X-ray	1.79	A/B/C/D	1-261	[»]

ProteinModelPortal

SMR

Q1GDP2. Positions 1-261.

ModBase

Protein-protein interaction databases

STRING

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

GeneID

GenomeReviews

Gene locus TM1040_2492 in contig CP000377_GR.

KEGG

sit:TM1040_2492.

NMPDR

fig|292414.1.peg.789.

PATRIC

23389256. VBIRueSp69653_3432.

Organism-specific databases

CMR

Phylogenomic databases

eggNOG

HOGENOM

OMA

ProtClustDB

Enzyme and pathway databases

BioCyc

SSP292414:TM1040_2492-MONOMER.

Family and domain databases

InterPro

IPR013094. AB_hydrolase_3.
[Graphical view]

Pfam

PF07859. Abhydrolase_3. 1 hit.
[Graphical view]

ProtoNet

Entry information

Entry name

Q1GDP2_SILST

Accession

Primary (citable) accession number: Q1GDP2

Entry history

Integrated into UniProtKB/TrEMBL:	June 27, 2006
Last sequence update:	June 27, 2006
Last modified:	December 14, 2011
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info