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Q1GCA0 (Q1GCA0_RUEST) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 49. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Putrescine-binding periplasmic protein PIRNR PIRNR019574
Gene names
Ordered Locus Names:TM1040_2984 EMBL ABF65716.1
OrganismRuegeria sp. (strain TM1040) (Silicibacter sp.) [Complete proteome] [HAMAP] EMBL ABF65716.1
Taxonomic identifier292414 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRuegeria

Protein attributes

Sequence length362 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Required for the activity of the bacterial periplasmic transport system of putrescine By similarity. PIRNR PIRNR019574

Subcellular location

Periplasm By similarity PIRNR PIRNR019574.

Sequence similarities

Belongs to the bacterial solute-binding protein PotD/PotF family. PIRNR PIRNR019574

Ontologies

Keywords
   Biological processTransport PIRNR PIRNR019574
   Cellular componentPeriplasm PIRNR PIRNR019574
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processpolyamine transport

Inferred from electronic annotation. Source: InterPro

   Cellular_componentperiplasmic space

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionpolyamine binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q1GCA0 [UniParc].

Last modified June 27, 2006. Version 1.
Checksum: 3B862D880EE50742

FASTA36239,849
        10         20         30         40         50         60 
MKTKTATIVS AIALSAAAAA SADEVRVYNW SDYIDESLLA KFEEETGIEL IYDVFDSNEL 

        70         80         90        100        110        120 
LETKMLAGGS GYDVVVPTGS FLQRQIQAGV FQKIDREKLT NYGNVWDVIQ ERNARFDPDN 

       130        140        150        160        170        180 
AYSINYMWGT TGLGTNLGKV AEALGDDAPI DSLSLVFDPA NMEKLSECGV HFLDAPTEMM 

       190        200        210        220        230        240 
PAALTYLGLD PNTEDKAELE RAADVLEAVR PYVQKFHSSE YINALANGDI CVAFGWSGDI 

       250        260        270        280        290        300 
LQARDRAAEA DNGVEIAYNA PSEGALMWFD QMAIPVDAPN PEAAHKFLDF MLDAQNMATA 

       310        320        330        340        350        360 
SNYVYYANGN KASQEFLEDD VINDPAIYPT PEAMENTYIK APYSQKAQRV VTRLWTRVKS 


GT 

« Hide

References

[1]"Complete sequence of chromosome of Silicibacter sp. TM1040."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Goodwin L., Thompson L.S., Gilna P. expand/collapse author list , Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Belas R., Moran M.A., Buchan A., Gonzalez J.M., Schell M.A., Sun F., Richardson P.
Submitted (MAY-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: TM1040.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000377 Genomic DNA. Translation: ABF65716.1.
RefSeqYP_614978.1. NC_008044.1.

3D structure databases

ProteinModelPortalQ1GCA0.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING292414.TM1040_2984.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABF65716; ABF65716; TM1040_2984.
GeneID4078014.
KEGGsit:TM1040_2984.
PATRIC23390271. VBIRueSp69653_3934.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0687.
HOGENOMHOG000263815.
KOK11073.
OrthoDBEOG66XBH9.
ProtClustDBCLSK759288.

Enzyme and pathway databases

BioCycRSP292414:GHCT-3035-MONOMER.

Family and domain databases

InterProIPR001188. Sperm_putr-bd.
[Graphical view]
PIRSFPIRSF019574. Periplasmic_polyamine_BP. 1 hit.
PRINTSPR00909. SPERMDNBNDNG.
ProtoNetSearch...

Entry information

Entry nameQ1GCA0_RUEST
AccessionPrimary (citable) accession number: Q1GCA0
Entry history
Integrated into UniProtKB/TrEMBL: June 27, 2006
Last sequence update: June 27, 2006
Last modified: February 19, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)