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Protein
Submitted name:

Tgm2b protein

Gene

tgm2b

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei268 – 2681UniRule annotation
Active sitei327 – 3271UniRule annotation
Active sitei350 – 3501UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Tgm2b proteinImported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:tgm2bImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 6

Organism-specific databases

ZFINiZDB-GENE-030131-2576. tgm2b.

PTM / Processingi

Proteomic databases

PaxDbiF1R7N2.
Q1ECX3.

Expressioni

Gene expression databases

BgeeiF1R7N2.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000099554.

Structurei

3D structure databases

ProteinModelPortaliQ1ECX3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini260 – 35394TGcInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG410IFMV. Eukaryota.
ENOG410XQEZ. LUCA.
GeneTreeiENSGT00760000119108.
HOGENOMiHOG000231695.
HOVERGENiHBG004342.
InParanoidiF1R7N2.
KOiK05625.
OMAiAHITNNT.
OrthoDBiEOG7WT40M.
TreeFamiTF324278.

Family and domain databases

Gene3Di2.60.40.10. 3 hits.
3.90.260.10. 1 hit.
InterProiIPR023608. Gln_gamma-glutamylTfrase_euk.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR002931. Transglutaminase-like.
IPR008958. Transglutaminase_C.
IPR001102. Transglutaminase_N.
[Graphical view]
PANTHERiPTHR11590. PTHR11590. 1 hit.
PfamiPF00927. Transglut_C. 2 hits.
PF01841. Transglut_core. 1 hit.
PF00868. Transglut_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000459. TGM_EBP42. 1 hit.
SMARTiSM00460. TGc. 1 hit.
[Graphical view]
SUPFAMiSSF49309. SSF49309. 2 hits.
SSF81296. SSF81296. 1 hit.

Sequencei

Sequence statusi: Complete.

Q1ECX3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALDIGSWDL ACKFNNTDHH TELNGTDRLI VRRGQAFTIN LQLNSGSYQP
60 70 80 90 100
GYSQINITAE TGPDPQQQYG TRAVFSLSSE VDSSCWSAAV SSPPGESVCL
110 120 130 140 150
SICAAPDAPI GHYTLTLDER IQIQFILLFN PWCPLDVVYM DNEEKLAEYV
160 170 180 190 200
LAQDGIIFRG DAGYPVPLAW NFGQFEEGIL DACFRILDMN PKHRRNPAKD
210 220 230 240 250
CSGRRNVIYV TRVLSAMINS NDQDSGVLEG CWRDTFDGGV SPMSWGGSVQ
260 270 280 290 300
ILRTWDRSSC LPVRYGQCWV FAAVACTVAR AVGIPCRVVT NYYSAHDTNS
310 320 330 340 350
NLLIERYVNE KGEVDHSSTR DMIWNYHCWV ESWMGRSDLP PGFDGWQASD
360 370 380 390 400
PTPQEKSEGV FCCGPVPVRA IKEGELTFKY DAPFVFAEVN ADLVYFLKSK
410 420 430 440 450
DGSTRKINYD QKVGQKISTK SVGRDEREDI THLYKYPEGS ADERRVFEKA
460 470 480 490 500
NHQNKLLQEK QNTGLNITIK LSSGVRKGCD FDVFAIVTNG TAEEKKCRLV
510 520 530 540 550
FASRAVSYNG VIGRECGFKD LLNVELPPGG ERKVPLRLNY SKYCNNLTED
560 570 580 590 600
NLIRLGALLI DYSTRDAIMA MRDIVLDDPE IKIRILGEPK ENRKLAAELT
610 620 630 640 650
IQNPLPEALQ SCCFTIEGAN LTGGDSITHT LDSSIEPGQE AKAKIYFTPT
660 670
QSGLRKLLVD FNSDKLGHVR GYRNVIIGK
Length:679
Mass (Da):75,773
Last modified:July 11, 2006 - v1
Checksum:iCA43F4888970F033
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CABZ01052101 Genomic DNA. No translation available.
CABZ01052102 Genomic DNA. No translation available.
CU571379 Genomic DNA. No translation available.
CU634004 Genomic DNA. No translation available.
BC117635 mRNA. Translation: AAI17636.1.
RefSeqiNP_997821.2. NM_212656.2.
UniGeneiDr.16524.

Genome annotation databases

EnsembliENSDART00000114314; ENSDARP00000099554; ENSDARG00000074094.
GeneIDi323856.
KEGGidre:323856.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CABZ01052101 Genomic DNA. No translation available.
CABZ01052102 Genomic DNA. No translation available.
CU571379 Genomic DNA. No translation available.
CU634004 Genomic DNA. No translation available.
BC117635 mRNA. Translation: AAI17636.1.
RefSeqiNP_997821.2. NM_212656.2.
UniGeneiDr.16524.

3D structure databases

ProteinModelPortaliQ1ECX3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000099554.

Proteomic databases

PaxDbiF1R7N2.
Q1ECX3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000114314; ENSDARP00000099554; ENSDARG00000074094.
GeneIDi323856.
KEGGidre:323856.

Organism-specific databases

CTDi323856.
ZFINiZDB-GENE-030131-2576. tgm2b.

Phylogenomic databases

eggNOGiENOG410IFMV. Eukaryota.
ENOG410XQEZ. LUCA.
GeneTreeiENSGT00760000119108.
HOGENOMiHOG000231695.
HOVERGENiHBG004342.
InParanoidiF1R7N2.
KOiK05625.
OMAiAHITNNT.
OrthoDBiEOG7WT40M.
TreeFamiTF324278.

Gene expression databases

BgeeiF1R7N2.

Family and domain databases

Gene3Di2.60.40.10. 3 hits.
3.90.260.10. 1 hit.
InterProiIPR023608. Gln_gamma-glutamylTfrase_euk.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR002931. Transglutaminase-like.
IPR008958. Transglutaminase_C.
IPR001102. Transglutaminase_N.
[Graphical view]
PANTHERiPTHR11590. PTHR11590. 1 hit.
PfamiPF00927. Transglut_C. 2 hits.
PF01841. Transglut_core. 1 hit.
PF00868. Transglut_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000459. TGM_EBP42. 1 hit.
SMARTiSM00460. TGc. 1 hit.
[Graphical view]
SUPFAMiSSF49309. SSF49309. 2 hits.
SSF81296. SSF81296. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: WholeImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: TuebingenImported.
  3. "The zebrafish reference genome sequence and its relationship to the human genome."
    Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
    , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G., Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C., Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
    Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TuebingenImported.

Entry informationi

Entry nameiQ1ECX3_DANRE
AccessioniPrimary (citable) accession number: Q1ECX3
Secondary accession number(s): F1R7N2
Entry historyi
Integrated into UniProtKB/TrEMBL: July 11, 2006
Last sequence update: July 11, 2006
Last modified: July 6, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.