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Q1D654

- GLGB_MYXXD

UniProt

Q1D654 - GLGB_MYXXD

Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Myxococcus xanthus (strain DK 1622)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 65 (01 Oct 2014)
      Sequence version 1 (11 Jul 2006)
      Previous versions | rss
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    Functioni

    Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

    Catalytic activityi

    Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei414 – 4141NucleophileUniRule annotation
    Active sitei467 – 4671Proton donorUniRule annotation

    GO - Molecular functioni

    1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
    2. cation binding Source: InterPro
    3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

    GO - Biological processi

    1. glycogen biosynthetic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Keywords - Biological processi

    Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

    Enzyme and pathway databases

    BioCyciMXAN246197:GIWU-3651-MONOMER.
    UniPathwayiUPA00164.

    Protein family/group databases

    CAZyiCBM48. Carbohydrate-Binding Module Family 48.
    GH13. Glycoside Hydrolase Family 13.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    1,4-alpha-glucan branching enzyme GlgBUniRule annotation (EC:2.4.1.18UniRule annotation)
    Alternative name(s):
    1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferaseUniRule annotation
    Alpha-(1->4)-glucan branching enzymeUniRule annotation
    Glycogen branching enzymeUniRule annotation
    Short name:
    BEUniRule annotation
    Gene namesi
    Name:glgBUniRule annotation
    Ordered Locus Names:MXAN_3682
    OrganismiMyxococcus xanthus (strain DK 1622)
    Taxonomic identifieri246197 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesCystobacterineaeMyxococcaceaeMyxococcus
    ProteomesiUP000002402: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 7347341,4-alpha-glucan branching enzyme GlgBPRO_0000260668Add
    BLAST

    Interactioni

    Subunit structurei

    Monomer.UniRule annotation

    Protein-protein interaction databases

    STRINGi246197.MXAN_3682.

    Structurei

    3D structure databases

    ProteinModelPortaliQ1D654.
    SMRiQ1D654. Positions 120-733.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0296.
    HOGENOMiHOG000283037.
    KOiK00700.
    OMAiISEGRHE.
    OrthoDBiEOG6JX7GT.

    Family and domain databases

    Gene3Di2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    HAMAPiMF_00685. GlgB.
    InterProiIPR006048. A-amylase_b_C.
    IPR006407. GlgB.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR004193. Glyco_hydro_13_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    PF02922. CBM_48. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000463. GlgB. 1 hit.
    SUPFAMiSSF51445. SSF51445. 1 hit.
    SSF81296. SSF81296. 2 hits.
    TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q1D654-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRKPADKAQV DAELQRVVEL RHPEPHAVLG IHPDGDGVVI RAFRPDAVAI    50
    HVLPESGGRV AMTHRPGGVY EARINGKDQT FNYLLEVEYP GKRVFTLRDP 100
    YSFLPTLGEM DLYYAGEGRH ERLWERMGAH LLHHHGVRGT SFAVWAPTAA 150
    GVSVVGDFNG WDGRLHSMRR MGSSGIWELF VPEVGEGTRY KFEIRPGQGG 200
    PNVLKADPFA FRTEVPPATA SVVHDLARYT WGDAAWLEQR AQRRDVHHQP 250
    WSVYEVHLGS WRRVVEDGDR PMTYRELAPA LAEYIKFTGF THIELLPVAE 300
    HPYGGSWGYQ VGGYYAPTAR FGHPDDLRFF IDHMHQEGIG VLVDWVPGHF 350
    PRDLHALGQF DGTALYEHAD PRKGAQPDWG TLVFNFGRNE VRNFLIANAL 400
    FWIEEYHIDG LRVDAVASML YLDYSRKQGE WIPNRWGGRE NEEAIHFLRE 450
    LNETVHRKHP GVVVIAEEST AWPKVSAPVS EGGLGFDYKW NMGWMHDTLS 500
    YFSKDPIYRQ YHHNQLTFGL LYAFSEQFML PLSHDEVVHG KGSLYGRMPG 550
    DPWQKRANLR ALFAWMWAHP GKKLVFMGGE FGQPAEWNHD KSLDWHLTHD 600
    PGHHGILQLV SDLNRIYRDM PALHDADGEP MGFQWLQPDS AAYNVFAFVR 650
    RARQPGRHVV CIANLSPTVR ENYRVGFPFQ GRYVELLNTD AEQYGGSNLG 700
    NMGQIHTEPT GWDGQPASAT LTLPPLSVLW FTPG 734
    Length:734
    Mass (Da):83,383
    Last modified:July 11, 2006 - v1
    Checksum:i708A85B24C81DD25
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000113 Genomic DNA. Translation: ABF92763.1.
    RefSeqiYP_631869.1. NC_008095.1.

    Genome annotation databases

    EnsemblBacteriaiABF92763; ABF92763; MXAN_3682.
    GeneIDi4107458.
    KEGGimxa:MXAN_3682.
    PATRICi22649921. VBIMyxXan43560_3626.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000113 Genomic DNA. Translation: ABF92763.1 .
    RefSeqi YP_631869.1. NC_008095.1.

    3D structure databases

    ProteinModelPortali Q1D654.
    SMRi Q1D654. Positions 120-733.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 246197.MXAN_3682.

    Protein family/group databases

    CAZyi CBM48. Carbohydrate-Binding Module Family 48.
    GH13. Glycoside Hydrolase Family 13.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABF92763 ; ABF92763 ; MXAN_3682 .
    GeneIDi 4107458.
    KEGGi mxa:MXAN_3682.
    PATRICi 22649921. VBIMyxXan43560_3626.

    Phylogenomic databases

    eggNOGi COG0296.
    HOGENOMi HOG000283037.
    KOi K00700.
    OMAi ISEGRHE.
    OrthoDBi EOG6JX7GT.

    Enzyme and pathway databases

    UniPathwayi UPA00164 .
    BioCyci MXAN246197:GIWU-3651-MONOMER.

    Family and domain databases

    Gene3Di 2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    HAMAPi MF_00685. GlgB.
    InterProi IPR006048. A-amylase_b_C.
    IPR006407. GlgB.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR004193. Glyco_hydro_13_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    PF02922. CBM_48. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000463. GlgB. 1 hit.
    SUPFAMi SSF51445. SSF51445. 1 hit.
    SSF81296. SSF81296. 2 hits.
    TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DK 1622.

    Entry informationi

    Entry nameiGLGB_MYXXD
    AccessioniPrimary (citable) accession number: Q1D654
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 28, 2006
    Last sequence update: July 11, 2006
    Last modified: October 1, 2014
    This is version 65 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3