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Protein
Submitted name:

Quinone-reactive Ni/Fe hydrogenase HydB

Gene

HPAG1_0615

Organism
Helicobacter pylori (strain HPAG1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. ferredoxin hydrogenase activity Source: InterPro
  2. hydrogen:quinone oxidoreductase activity Source: UniProtKB-EC
  3. nickel cation binding Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotationImported

Keywords - Ligandi

Metal-bindingUniRule annotation, NickelUniRule annotation

Enzyme and pathway databases

BioCyciHPYL357544:GH1F-625-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Quinone-reactive Ni/Fe hydrogenase HydBImported (EC:1.12.5.1Imported)
Gene namesi
Ordered Locus Names:HPAG1_0615Imported
OrganismiHelicobacter pylori (strain HPAG1)Imported
Taxonomic identifieri357544 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter
ProteomesiUP000008835: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi357544.HPAG1_0615.

Structurei

3D structure databases

ProteinModelPortaliQ1CTP0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0374.
HOGENOMiHOG000278799.
KOiK05922.
OMAiCDIMSAL.
OrthoDBiEOG6M9DSB.

Family and domain databases

Gene3Di1.10.645.10. 1 hit.
InterProiIPR001501. Ni-dep_hyd_lsu.
IPR018194. Ni-dep_hyd_lsu_Ni_BS.
IPR029014. NiFe_Hase-like.
[Graphical view]
PfamiPF00374. NiFeSe_Hases. 1 hit.
[Graphical view]
SUPFAMiSSF56762. SSF56762. 1 hit.
PROSITEiPS00507. NI_HGENASE_L_1. 1 hit.
PS00508. NI_HGENASE_L_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1CTP0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSKKIVVDPI TRIEGHLRIE VIVDDDNVIT DAFSSSTLFR GLETIIKGRD
60 70 80 90 100
PRDAGFIAQR ICGVCTYSHY KAGITAVENA LGITPPLNAQ LVRSLMNMAL
110 120 130 140 150
LFHDHVVHFY TLHGLDWCDI MSALKADPIQ AAKLSFKYSP YPINTGAGEL
160 170 180 190 200
KAVQKRLNDF AKGGSLGPFS NGYYGHKTYR LSPEQNLIVL SHYLKLLEIQ
210 220 230 240 250
REAAKMTAIF GAKQPHPQSL TVGGVTSVMD ILDPTRLAEW KSKFEVVANF
260 270 280 290 300
INHAYYPDLV MAGEMFANEQ SVIKGCGLRN FIAYEEVLLG RDKYLLSSGV
310 320 330 340 350
VLDGDISKLH PIDESLIKEE VTHSWYQYED TKEVQLHPYD GQTNPHYTGL
360 370 380 390 400
KDGESVGIEN KIIPAKVLDT KNKYSWIKSP RYDSKPMEVG PLSSVVVGLA
410 420 430 440 450
AKNPYVTEVA TKFLKDTKLP LEALFSTLGR TAARCIEAKT IADNGLLAFD
460 470 480 490 500
ALVENLKSDQ STCAPYHIDK NQEYKGRYIG QVPRGMLSHW VRIKNGVVEN
510 520 530 540 550
YQAVVPSTWN AGPRDSQNQR GAYEMSLIGT KIADLTQPLE IIRTIHSFDP
560 570
CIACSVHVMD FKGQSLNEFK VEPNFAKF
Length:578
Mass (Da):64,394
Last modified:July 11, 2006 - v1
Checksum:i8D240ED394D649E7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000241 Genomic DNA. Translation: ABF84682.1.
RefSeqiYP_627356.1. NC_008086.1.

Genome annotation databases

EnsemblBacteriaiABF84682; ABF84682; HPAG1_0615.
GeneIDi4098858.
KEGGihpa:HPAG1_0615.
PATRICi20602578. VBIHelPyl56048_0637.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000241 Genomic DNA. Translation: ABF84682.1.
RefSeqiYP_627356.1. NC_008086.1.

3D structure databases

ProteinModelPortaliQ1CTP0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi357544.HPAG1_0615.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABF84682; ABF84682; HPAG1_0615.
GeneIDi4098858.
KEGGihpa:HPAG1_0615.
PATRICi20602578. VBIHelPyl56048_0637.

Phylogenomic databases

eggNOGiCOG0374.
HOGENOMiHOG000278799.
KOiK05922.
OMAiCDIMSAL.
OrthoDBiEOG6M9DSB.

Enzyme and pathway databases

BioCyciHPYL357544:GH1F-625-MONOMER.

Family and domain databases

Gene3Di1.10.645.10. 1 hit.
InterProiIPR001501. Ni-dep_hyd_lsu.
IPR018194. Ni-dep_hyd_lsu_Ni_BS.
IPR029014. NiFe_Hase-like.
[Graphical view]
PfamiPF00374. NiFeSe_Hases. 1 hit.
[Graphical view]
SUPFAMiSSF56762. SSF56762. 1 hit.
PROSITEiPS00507. NI_HGENASE_L_1. 1 hit.
PS00508. NI_HGENASE_L_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The complete genome sequence of a chronic atrophic gastritis Helicobacter pylori strain: evolution during disease progression."
    Oh J.D., Kling-Baeckhed H., Giannakis M., Xu J., Fulton R.S., Fulton L.A., Cordum H.S., Wang C., Elliott G., Edwards J., Mardis E.R., Engstrand L.G., Gordon J.I.
    Proc. Natl. Acad. Sci. U.S.A. 103:9999-10004(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HPAG1Imported.

Entry informationi

Entry nameiQ1CTP0_HELPH
AccessioniPrimary (citable) accession number: Q1CTP0
Entry historyi
Integrated into UniProtKB/TrEMBL: July 11, 2006
Last sequence update: July 11, 2006
Last modified: February 4, 2015
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.